Table 1. Statistics for each of the core species’ canonical sequence sets.

Species	# of sequences in ref. proteome	# of sequences with >1 model	≥ 80%	≥60%	≥40%	≥20%	<20%	No template
H. sapiens	21 006	15 195	5010	3299	2673	2648	1965	5411
M. musculus	22 274	16 860	6331	3337	2789	2765	1638	5414
C. elegans	20 071	10 566	3489	1917	1852	2026	1282	9505
E. coli K12	4306	3306	2620	274	211	132	69	1000
A. thaliana	27 252	17 132	6544	3335	2772	3004	1477	10 120
D. melanogaster	13 704	8502	2956	1488	1309	1525	1224	5202
S. cerevisiae	6721	4101	1665	590	550	751	545	2620
C. crescentus	3715	2633	1914	303	191	154	71	1082
M. tuberculosis	3987	2921	2000	338	275	205	103	1066
P. aeruginosa	5550	4270	3271	405	311	199	84	1280
S. aureus	2881	1925	1500	170	117	94	44	956
P. falciparum	5340	2781	722	352	382	535	790	2559

For each species we show the total number of canonical sequences in the reference proteome (according to UniProtKB), the number of sequences for which we have at least one model, followed by the number of sequences that have models that cover at least 80% (60%, 40%, etc.) of the respective reference sequence.