Table II. Biomass composition used in the model.
Fraction | Source of Data and Reference |
---|---|
Pigments | Analysis of carotenoid composition (Takaichi et al., 2005; Takaichi and Mochimaru, 2007; Mochimaru et al., 2008; Graham and Bryant, 2009) |
DNA | Base abundance calculated from the genome sequence (Kaneko et al., 2001) |
RNA | Base abundance calculated for annotated genes and weighted by RNAseq abundance (Kaneko et al., 2001; Flaherty et al., 2011) |
Proteins | Amino acid abundance calculated and weighted by RNAseq abundance (Kaneko et al., 2001; Flaherty et al., 2011) |
Lipids | Adopted from Synechocystis sp. PCC 6803 (Nogales et al., 2012; Knoop et al., 2013) |
Cell wall | Adopted from Synechocystis sp. PCC 6803 |
Inorganic ions | Adopted from Synechocystis sp. PCC 6803 |
Pool fraction | Adopted from Synechocystis sp. PCC 6803a |
No genes could be identified for the biosynthesis of spermidine (Jantaro et al., 2003; Incharoensakdi et al., 2010).