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. 2016 Nov 29;173(1):509–523. doi: 10.1104/pp.16.01487

Table II. Biomass composition used in the model.

Fractional composition was adopted from the Synechocystis sp. PCC 6803 model developed by Nogales et al. (2012) and Knoop et al. (2013). The definition and the reaction formula of the different fractions were adapted for Anabaena sp. PCC 7120, wherever specific analysis data were available.

Fraction Source of Data and Reference
Pigments Analysis of carotenoid composition (Takaichi et al., 2005; Takaichi and Mochimaru, 2007; Mochimaru et al., 2008; Graham and Bryant, 2009)
DNA Base abundance calculated from the genome sequence (Kaneko et al., 2001)
RNA Base abundance calculated for annotated genes and weighted by RNAseq abundance (Kaneko et al., 2001; Flaherty et al., 2011)
Proteins Amino acid abundance calculated and weighted by RNAseq abundance (Kaneko et al., 2001; Flaherty et al., 2011)
Lipids Adopted from Synechocystis sp. PCC 6803 (Nogales et al., 2012; Knoop et al., 2013)
Cell wall Adopted from Synechocystis sp. PCC 6803
Inorganic ions Adopted from Synechocystis sp. PCC 6803
Pool fraction Adopted from Synechocystis sp. PCC 6803a
a

No genes could be identified for the biosynthesis of spermidine (Jantaro et al., 2003; Incharoensakdi et al., 2010).