. 2004 Sep 16;101(39):14150–14155. doi: 10.1073/pnas.0402745101

Table 2. Three-way comparisons for the B31, JD1, and N40 genomes.

Orthologous scaffolds^*	No. of ORF alignments^†	Partition 1^‡	Partition 2	Partition 3
Main chromosome	675 (84.8%)	0.0036	0.0026	0.0021
lp54,cp26,lp25,lp28-4,lp36	79 (52.7%)	0.0126	0.0066	0.0031

Orthologous genome segments, B31 nomenclature (23, 24).

^†

No. of alignments of orthologous ORFs, given as percentage of total ≥250-bp ORFs predicted on B31 chromosome or plasmids.

^‡

No. of nucleotide substitutions per site of phylogenetic partitions (31, 32). Partition 1, (B31, JD1), N40; partition 2, (B31, N40), JD1; partition 3, (JD1, N40), B31.