Table 2. Numbers of positive- and negative-phase LDs.

		No. of observed/expected pairs
Sample	Data	Positive and zero	Negative
KY01au	All	934/900	952/986
	R	521/516	568/573
	S	49/51	54/52
KY02sp	All	913/933	1,039/1,019
	R*	489/528	628/589
	S	59/55	53/57

R and S indicate replacement and silent polymorphisms, respectively. In(2L)t, In(3L)P, and 14 markers were excluded from the analysis (see Materials and Methods).

^*G′ = 5.57, P < 0.02 in G test for goodness of fit with df = 1.