Table 1.

Quantitative analysis of raw RNA-seq data.

Sample name	Raw reads	Clean reads	Clean bases (Gigabytes)	Error rate (%)	Q20 (%)	Q30 (%)	GC content (%)
Cf12_A1	61,268,982	59,705,188	7.46	0.01	97.75	94.94	42.49
Cf12_A2	62,723,930	61,114,280	7.64	0.01	98.19	95.89	42.69
Cf12_A3	53,881,786	52,201,090	6.53	0.01	98.38	96.26	42.44
Cf12_B1	57,197,802	55,752,170	6.97	0.01	98.17	95.84	42.66
Cf12_B2	63,063,966	61,400,394	7.68	0.01	98.08	95.68	42.51
Cf12_B3	48,132,558	47,308,268	5.91	0.01	98.04	95.72	42.67
Cf12_C1	58,287,568	56,764,192	7.1	0.01	98.28	96.16	42.91
Cf12_C2	77,177,398	75,155,218	9.39	0.01	98.33	96.26	42.61
Cf12_C3	77,003,654	75,050,742	9.38	0.01	98.32	96.21	42.72

Raw reads: the raw reads after transformation from the sequenced data by base calling. Clean reads: the reads of filtered raw reads. Clean bases: the clean bases after transformation from the sequenced data by base calling. Error rate: sequencing error rate. Q20: the bases amount ratio of error rate ≤ 1%. Q30: the bases amount ratio of error rate ≤ 0.1%. GC content: the amount of G & C in the total bases amount, %. A1–A3, B1–B3, and C1–C3 refer to three different samples from 0 (Cf12_A), 4 (Cf12_B), and 8 (Cf12_C) dpi, respectively.