TABLE 5.
WKYGla versus SHRSPGla NGS sequence variants on RNO3 within the region unique to congenic strain 3d when compared to 3f congenic strain
| SNP consequences | INDEL consequences | ||
| INTERGENIC | 11 468 | INTERGENIC | 1879 |
| UPSTREAM | 969 | UPSTREAM | 153 |
| DOWNSTREAM | 1022 | DOWNSTREAM | 162 |
| 3PRIME_UTR | 30 | 3PRIME_UTR | 11 |
| 5PRIME_UTR | 5 | 5PRIME_UTR | 0 |
| INTRONIC | 3895 | INTRONIC | 701 |
| SYNONYMOUS_CODING | 64 | SYNONYMOUS_CODING | 0 |
| NON_SYNONYMOUS_CODING | 59 | NON_SYNONYMOUS_CODING | 0 |
| STOP_GAINED | 0 | FRAMESHIFT_CODING | 5 |
| STOP_LOST | 0 | COMPLEX_INDEL | 0 |
| ESSENTIAL_SPLICE_SITE | 2 | ESSENTIAL_SPLICE_SITE | 0 |
| SPLICE_SITE | 10 | SPLICE_SITE | 3 |
| WITHIN_MATURE_miRNA | 0 | WITHIN_MATURE_miRNA | 0 |
| WITHIN_NON_CODING_GENE | 27 | WITHIN_NON_CODING_GENE | 3 |
NGS, next-generation sequencing; RNO3, rat chromosome 3; SHRSP, stroke-prone spontaneously hypertensive; WKY, Wistar–Kyoto.