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. 2017 Jan 5;7:1994. doi: 10.3389/fpls.2016.01994

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Copyright © 2017 Vannozzi, Donnini, Vigani, Corso, Valle, Vitulo, Bonghi, Zocchi and Lucchin.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Heat-map of DE genes specifically regulated in rots grown in presence of bicarbonate. (A) The mean unique-read values of DE genes identified specifically in presence of bicarbonate were graphically represented by mean of MeV software. Hierarchical clustering was performed using MeV HCL tool using the Pearson correlation coefficient. Up-regulated genes are indicated in red whereas down-regulated genes are colored in green. (B) Expression clusters identified using the k-mean clustering based on Pearson correlation coefficient (C) Main gene ontology categories related to DEGs according to VitisNet gene prediction update (Grimplet et al., 2012). For each category the contribute of up- (red) and down- (green) regulated genes is reported.