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. 2017 Jan 5;8:1. doi: 10.1186/s40104-016-0130-8

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© The Author(s). 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Functional analysis and comparison of microbial communities. a Canonical loading plot showing the magnitude of the influence of each variable on separation of individual peaks in the broiler microbiota (0.05 threshold level). Normalised abundances of functional activities b phosphotransferase system, c glycan degradation, and d recombination and repair proteins after Salmonella challenge. The interquartile ranges are indicated by the outer bounds of the boxes, the median by the midline (black), and the outliers are indicated by black circles (●). Tukey’s honestly significant difference (HSD) test was used to evaluate statistical significance (P < 0.05)