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. 2017 Jan 5;7:2024. doi: 10.3389/fpls.2016.02024

Table 1.

Primers in the real-time PCR assay for validating the differential expressions of circRNAs after sequencing.

Target name Primer name Sequence (5′ → 3′) Amplicon size (bp) Tm (°C)
4A:214775737|215210034 1-Forward 1-Reverse TTGCCTGTCTTGGGATCTTC GGCAAGGATCCCCCTAAATA 212 60.2 59.8
5B:221655648|222074380 2-Forward 2-Reverse GTCGATCCTGCTCATGTTGA CCATTGTCGCATCTTGTTTG 215 59.8 60.1
5D:124926662|125373509 3-Forward 3-Reverse AATAGGCGGAGAACCATTCA CCCCGACTCCTACTTGGTTA 158 59.0 59.4
5D:18963119|19091255 4-Forward 4-Reverse TGGAGGAGTGGTTCTTCCAC CGTCGAAGGTGACGTACTTG 186 60.1 59.5
6A:201878372|202172929 5-Forward 5-Reverse ACCTCTAGCCCCACTGTTGA CCAGGAGGCTTGAGAAAGAG 172 59.7 60.1
6D:169739848|170130661 6-Forward 6-Reverse TTTTCATACCAAGGCAAGCA CTCCCTCATCATCTCCTCCA 201 60.2 60.1
2D:62914891|62916501 7-Forward 7-Reverse AACTCGGTTTGAGATAAGCTACC CAAATTGAGCAACGCCAAAT 156 58.1 61.0
3B:15806226|15817694 8-Forward 8-Reverse GCAGGACATGGAAGCTCATC GGCCAGGATCTTCTTCTTCC 185 60.1 60.0
3B:68150153|68152981 9-Forward 9-Reverse ATTTACCCGAGGACCCACTT GATCCATGGCAACACTTCCT 227 59.7 59.9
IWGSC_CSS_4DS_scaff_2307013:2345|3583 10-Forward 10-Reverse CCCATTTAAAAACTTGCGTGA GTGCCTTAACAGCCCTCTTG 193 60.0 59.9
7A:11715620|11717078 11-Forward 11-Reverse TCCAAACATATGGAAGGATGC ACGGCTTCAGTTCAAACACC 192 59.8 60.2
5A:128534161|128535165 12-Forward 12-Reverse AGGACCTTTGACGCACTGTT TCTCTATTCGCAGTCCATGCT 202 59.8 60.0
7D:12625708|12627116 13-Forward 13-Reverse TCCAAACATATGGAAGGATGC AAATTCGAGAGGGGTTACCA 199 59.8 58.0
IWGSC_CSS_2BL_scaff_7985665:1994|3344 14-Forward 14-Reverse AACCTTGTGCCATGGATGTA TCTCTATTCGCAATCCATGCT 175 58.9 59.9
IWGSC_CSS_5AL_scaff_2801994:5461|6705 15-Forward 15-Reverse TGACATCAGCATCGCAAAAT TCAGCCTCTAACCAGCTTCC 205 60.2 59.6
6B:195302800|195307032 16-Forward 16-Reverse TTGCGTTCAAGGCTAAAAGG TTTTTCCGGTTGATGAGGAC 198 60.4 59.9
GAPDH CK-Forward CK-Reverse ACATTAAGGGTGGTGCCAAG TGGTCATCAAACCCTCAACA 198 59.9 59.9