Table 3.
The top 20 downregulated lncRNAs.
| Seq. name | Source | Fold change | Chrom. | Strad. | txStrat | txEnd | Associated gene name |
|---|---|---|---|---|---|---|---|
| NONHSAT053431 | NONCODE v4 | 22.78803 | chr17 | + | 37395854 | 37400623 | FBXL20 |
| NONHSAT030286 | NONCODE v4 | 17.52123 | chr12 | + | 101988749 | 102021958 | MYBPC1 |
| FR244962 | fRNAdb v3.4 | 16.8388 | chr7 | + | 31551811 | 31552010 | |
| ENST00000601148 | Ensembl | 15.31924 | chr19 | + | 51843949 | 51847370 | |
| TCONS_l2_00026076 | Broad lincRNA | 13.31326 | chr7 | + | 80804833 | 80828289 | |
| FR193036 | fRNAdb v3.4 | 12.53563 | chr19 | − | 56526608 | 56527152 | |
| NONHSAT125631 | NONCODE v4 | 12.31555 | chr8 | + | 25398695 | 25408293 | |
| TCONS_l2_00016248 | Broad lincRNA | 12.02637 | chr20 | + | 37230676 | 37256614 | |
| NONHSAT030224 | NONCODE v4 | 12.02533 | chr12 | − | 100560001 | 100562998 | GOLGA2P5 |
| NONHSAT076673 | NONCODE v4 | 11.6689 | chr2 | − | 211074313 | 211081443 | ACADL |
| NONHSAT137402 | NONCODE v4 | 11.66708 | chrX | + | 69454505 | 69457167 | AWAT1 |
| ENST00000580420 | Ensembl | 11.61363 | chr18 | + | 29522538 | 29524119 | |
| FR174595 | fRNAdb v3.4 | 11.10483 | chr6 | + | 118888744 | 118889041 | |
| NONHSAT077942 | NONCODE v4 | 11.03293 | chr2 | − | 242455829 | 242457154 | |
| NONHSAT060814 | NONCODE v4 | 10.87916 | chr19 | + | 7410710 | 7411049 | |
| NONHSAT097800 | NONCODE v4 | 10.56074 | chr4 | + | 110897243 | 110898692 | EGF |
| NONHSAT070090 | NONCODE v4 | 10.32572 | chr2 | + | 36991437 | 36993016 | VIT |
| TCONS_00022478 | Broad lincRNA | 10.21703 | chr14 | + | 38205181 | 38208450 | |
| ENST00000556024 | Ensembl | 9.802968 | chr14 | − | 38025363 | 38036300 | |
| NONHSAT102735 | NONCODE v4 | 9.773005 | chr5 | + | 90142207 | 90144638 | GPR98 |