Figure 2.

Phylogenies of the chickadees data. The function getTree was used to obtain individual phylogenies for each locus (patr_poat43, 47, 48 and 49), and from the concatenated alignment (central phylogeny). Each phylogeny is an unrooted, neighbour‐joining tree based on Hamming distances between DNA sequences. Taxa are identified using colours to facilitate comparison of the trees.