Table 5. List of significant cis-eQTLs mapping close to QTL regions for gluteus medius meat quality traits.
| QTLs |
Genes |
Cis-eQTLs |
|||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Traits | SSC | Location (Mb) | Names | SSC | Location (Mb) | SSC | N | SNPs | Location (Mb) | P-value | q-value | B | δ ± SE | A1 | MAF |
| GM a* | 3 | 50.2–57.2 | IGKC | 3 | 59.8 | 3 | 20 | ALGA0019294 | 58.0–61.9 | 7.54E-11 | 4.60E-07 | 2.15E-06 | −1.6 ± 0.22 | A | 0.19 |
| 120.0–120.4 | ADCY3 | 121.1–121.2 | 3 | ALGA0103469 | 120.0–121.9 | 2.28E-06 | 0.05 | 0.06 | −0.83 ± 0.17 | A | 0.08 | ||||
| GM pH24 | 17 | 53.1–57.2 | SLPI | 17 | 53.1 | 17 | 16 | ALGA0095584 | 52.3–55.9 | 6.00E-08 | 3.48E-04 | 1.64E-03 | 2.30 ± 0.40 | A | 0.13 |
a*: Minolta redness, pH24: pH at 24 hours post-mortem, N: number of significant SNPs, SNPs: marker displaying the most significant association with the trait under study, Location (Mb): region containing SNPs significantly associated with the trait under study, P-value: nominal P-value, q-value: q-value calculated with a false discovery rate approach, B: P-value corrected for multiple testing with the Bonferroni method, δ: allelic effect and its standard error (SE), A1: minority allele, MAF: frequency of the minority allele.