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. 2017 Jan 4;13(1):e1006096. doi: 10.1371/journal.ppat.1006096

Table 1. RNA-sequencing expression data for the genes regulated by AtrR and SrbA.

RPKM Expression ratio
ID Gene name Af293 ΔatrR ΔsrbA ΔatrR/Af293 ΔsrbA/Af293 Annotation
UP in ΔatrR and ΔsrbA
Afu1g03800 13.8 83.1 205.3 6.01 14.84 C6 transcription factor, putative
Afu2g05060 aoxA 474.7 4255.6 6685.0 8.97 14.08 alternative oxidase AlxA, putative
Afu3g03280 46.7 324.7 542.2 6.95 11.60 FAD binding monooxygenase, putative
Afu3g13010 52.5 390.8 567.2 7.44 10.80 Zn-dependent hydrolase/oxidoreductase family protein, putative
Afu4g09450 24.0 97.0 171.1 4.04 7.13 hypothetical protein
Afu4g14380 203.2 1313.3 1894.0 6.46 9.32 hypothetical protein
Afu5g06070 mdr1 11.9 65.9 108.2 5.53 9.09 ABC multidrug transporter Mdr1
Afu7g00950 10.3 60.5 77.7 5.87 7.54 MFS monosaccharide transporter, putative
Afu8g01860 30.6 163.0 218.8 5.32 7.15 hypothetical protein
DOWN in ΔatrR and ΔsrbA
Afu1g03150 erg24A 25.5 1.1 2.5 0.04 0.10 c-14 sterol reductase
Afu2g00320 erg3B 116.8 0.4 0.8 0.00 0.01 sterol delta 5,6-desaturase, putative
Afu2g00330 10.5 1.5 0.6 0.15 0.06 beta-alanine synthase, putative
Afu2g17660 11.7 1.5 0.8 0.13 0.07 C4-dicarboxylate transporter/malic acid transport protein, putative
Afu3g00810 hyd1 39.7 1.2 0.0 0.03 0.00 cholestenol delta-isomerase, putative
Afu3g00820 14.5 0.3 1.0 0.02 0.07 conserved hypothetical protein
Afu4g06890 cyp51A 261.4 14.9 40.2 0.06 0.15 14-alpha sterol demethylase Cyp51A
Afu5g01248 24.5 0.8 0.8 0.03 0.03 conserved hypothetical protein
Afu5g14740 fleA 91.6 9.3 6.7 0.10 0.07 fucose-specific lectin FleA
Afu7g01490 ptr2 149.7 23.4 27.8 0.16 0.19 MFS peptide transporter Ptr2, putative
Afu704920 138.3 20.1 16.6 0.15 0.12 hypothetical protein
Afu7g04930 pr1 26.7 0.7 2.2 0.03 0.08 alkaline serine protease (PR1)/allergen F18-like
Afu7g06981 13.0 1.5 2.5 0.12 0.19 conserved hypothetical protein
Afu8g00830 135.7 13.2 23.9 0.10 0.18 conserved hypothetical protein
Afu8g01330 10.2 0.6 1.8 0.06 0.18 hypothetical protein
Afu8g02440 erg25A 1345.1 84.5 40.5 0.06 0.03 C-4 methyl sterol oxidase, putative
Afu8g06000 18.2 4.3 4.3 0.24 0.24 FMN dependent dehydrogenase, putative
Afu8g06010 36.8 6.4 8.8 0.17 0.24 C6 transcription factor, putative