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. 2017 Jan 5;13(1):e1006090. doi: 10.1371/journal.ppat.1006090

Table 2. Data collection and refinement statistics for SpGH92 and NgtS.

SpGH92 Mannose NgtS NaI NgtS Man1GlcNAc NgtS Man5GlcNAc
Data collection statistics
Beamline SSRL BL7-1 Home source SSRL BL9-2 SSRL BL9-2
Wavelength 0.9753 1.54187 1.04007 0.98005
Spacegroup P212121 P21 P1 P21
Cell dimensions: a, b, c (Å) 130.0, 161.7, 208.4 60.91, 40.20, 93.89 39.99, 50.47, 107.89 104.18, 11.60, 105.84
Resolution (Å) 40.00–2.15 (2.19–2.15)* 21.80–2.10 (2.21–2.10)* 45.95–3.00 (3.16–3.00)* 48.37–1.73 (1.82–1.73)*
Rmerge 0.103 (0.819)* 0.126 (0.503)* 0.137 (0.459)* 0.036 (0.397)*
I/σI 14.4 (2.6)* 19.5 (5.1)* 6.6 (2.3)* 25.4 (4.0)*
Completeness (%) 99.9 (98.7)* 99.8 (99.6)* 97.0 (97.0)* 99.9 (99.9)*
Redundancy 7.5 (7.4)* 10.9 (10.5)* 2.2 (2.1)* 4.7 (4.6)*
Refinement statistics
Total reflections 1786138 291180 (40192)* 35594 (5086)* 1095333 (158575)*
Unique reflections 237386 26624 (3833)* 16399 (2413)* 234916 (34209)*
Rwork/Rfree 19.7/22.4 21.1/26.1 22.9/28.1 18.2/22.0
No. of atoms
Protein 21991 (4 molecules) 3491 (1 molecule) 6884 (2 molecules) 14283 (4 molecules)
Ligands 4 (CA), 48 (BMA), 96 (GOL) 21 (IOD) 52 (CHO), 2 (BR) 280 (CHO), 35 (CD)
Solvent 1364 (H2O) 227 (H2O) 51 (H2O) 2149 (H2O)
Average B-factors (Å2)
Protein 36.3 20.1 39.5 29.0
Ligands 23.3 (CA), 39.0 (BMA), 49.5 (GOL) 38.3 (IOD) 40.2 (CHO), 65.4 (BR) 20.4 (CHO)
Solvent 36.6 (H2O) 19.2 (H2O) 18.9 (H2O) 20.4 (H2O), 40.3 (CD)
R.m.s. deviations
Bond lengths (Å) 0.009 0.010 0.004 0.019
Bond angles (°) 1.232 1.418 0.835 1.893
Ramachandran
Preferred (%) 97.4 96.7 93.5 97.8
Allowed (%) 2.2 3.1 5.8 2.0
Disallowed (%) 0.3 (8 residues) 0.2 (1 residue) 0.7 (5 residues) 0.2 (4 residues)

*Parentheses indicate values for the high-resolution reflection bins.