Table 3. Concordantly changed genes located in candidate copy number alterations.
| Region | Cytoband | Size (bp) | Gain/Loss | Gene | Gene expression |
|---|---|---|---|---|---|
| chr1:152175304,152218160 | 1q21.3 | 42,857 | gain | CREB3L4 | up |
| chr5:98922,1202132 | 5p15.33 | 1,103,211 | gain | CEP72 | up |
| TRIP13 | up | ||||
| chr5:1202132,4534212 | 5p15.33-p15.32 | 3,332,081 | gain | SLC6A3 | up |
| chr5:4534212,10760368 | 5p15.32-p15.2 | 6,226,157 | gain | ADAMTS16 | up |
| SRD5A1 | up | ||||
| LOC442132 | up | ||||
| DNAH5 | up | ||||
| chr5:15167194,19455597 | 5p15.1-p14.3 | 4,288,404 | gain | BASP1 | up |
| chr5:21612069,24442605 | 5p14.3-p14.2 | 2,830,537 | gain | PMCHL1 | up |
| chr5:24442605,27519779 | 5p14.2-p14.1 | 3,077,175 | gain | LOC643401 | up |
| chr8:80437231,80753285 | 8q21.13 | 316,055 | gain | STMN2 | up |
| chr8:95372666,96348526 | 8q22.1 | 975,861 | gain | RAD54B | up |
| INTS8 | up | ||||
| CCNE2 | up | ||||
| chr8:102462829,103474256 | 8q22.3 | 1,011,428 | gain | GRHL2 | up |
| chr8:104149770,104765560 | 8q22.3 | 615,791 | gain | CTHRC1 | up |
| RIMS2 | up | ||||
| chr8:121617619,122330989 | 8q24.12 | 713,371 | gain | SNTB1 | up |
| chr8:124301834,124488436 | 8q24.13 | 186,603 | gain | ATAD2 | up |
| chr8:124529533,124985146 | 8q24.13 | 455,614 | gain | FBXO32 | up |
| ANXA13 | up | ||||
| FAM91A1 | up | ||||
| chr8:128501258,129666438 | 8q24.21 | 1,165,181 | gain | PVT1 | up |