Table 6. Comparison of concordant recurrent CNAs with literature.
| This study | Staaf et al [12] | The Cancer Genome Atlas Research Network [13] | Barbara et al [14] | Top candidate gene | ||||
|---|---|---|---|---|---|---|---|---|
| CNA | Region (bp) | CNA | Region (bp) | CNA | Region (bp) | CNA | Region (Mb) | |
| Amp_1q21.3 | chr1:152175304–152218160 | Amp_1q21.3 | chr1:120523956–152743148 | CREB3L4 | ||||
| Amp_5p15.33 | chr5:98922–1202132 | Amp_5p15.33 | chr5:120000–1686000 | AHRR, TRIP13, NKD2 | ||||
| Amp_5p15.33-p15.32 | chr5:1202132–4534212 | Amp_5p15.33 | chr5:120000–1686000 | Amp_5p15.33 | chr5:1288616–1300024 | Amp_5p15.33 | chr5:0.75–1.62 | TERT, SLC6A3 |
| Amp_5p15.32-p15.2 | chr5:4534212–10760368 | Amp_5p15.31 | chr5:8.88–10.51 | |||||
| Amp_5p15.1-p14.3 | chr5:15167194–19455597 | |||||||
| Amp_5p14.3 | chr5:19455597–20320969 | Amp_5p14.3 | chr5:19.72–23.09 | |||||
| Amp_5p14.3 | chr5:21488497–21612069 | Amp_5p14.3 | chr5:19.72–23.09 | |||||
| Amp_5p14.3-p14.2 | chr5:21612069–24442605 | Amp_5p14.3 | chr5:19.72–23.09 | |||||
| Amp_5p14.2-p14.1 | chr5:24442605–27519779 | |||||||
| Amp_7p22.3 | chr7:136363–478785 | |||||||
| Amp_7p11.2 | chr7:54989787–55769659 | Amp_7p11.2 | chr7:54795000–55455000 | Amp_7p11.2 | chr7:54535672–55737616 | Amp_7p11.2 | chr7:54.65–55.52 | EGFR |
| Amp_8q21.12 | chr8:79282515–79584188 | |||||||
| Amp_8q21.12 | chr8:79587922–80003750 | |||||||
| Amp_8q21.12-q21.13 | chr8:80175394–80433401 | |||||||
| Amp_8q21.13 | chr8:80437231–80753285 | Amp_8q21.13 | chr8:80.66–82.55 | |||||
| Amp_8q21.13 | chr8:80756352–81238430 | Amp_8q21.13 | chr8:80.66–82.55 | |||||
| Amp_8q21.13 | chr8:81592461–81654094 | Amp_8q21.13 | chr8:80.66–82.55 | |||||
| Amp_8q21.13 | chr8:81718686–82433172 | Amp_8q21.13 | chr8:80.66–82.55 | |||||
| Amp_8q21.13 | chr8:82435662–82717833 | Amp_8q21.13 | chr8:80.66–82.55 | |||||
| Amp_8q22.1 | chr8:95372666–96348526 | CCNE2, RAD54B | ||||||
| Amp_8q22.3 | chr8:102462829–103474256 | Amp_8q22.3 | chr8:102908001–103565001 | GRHL2, NCALD | ||||
| Amp_8q22.3 | chr8:103630996–103849228 | KLF10 | ||||||
| Amp_8q22.3 | chr8:103856352–104144193 | |||||||
| Amp_8q22.3 | chr8:104149770–104765560 | CTHRC1 | ||||||
| Amp_8q23.1 | chr8:107627585–108503880 | |||||||
| Amp_8q23.1 | chr8:108962975–109534011 | |||||||
| Amp_8q23.1 | chr8:110143020–110414628 | |||||||
| Amp_8q23.1-q23.2 | chr8:110496232–110689673 | |||||||
| Amp_8q23.2 | chr8:110697169–110915327 | |||||||
| Amp_8q24.11 | chr8:118584139–118626715 | |||||||
| Amp_8q24.12 | chr8:121617619–122330989 | |||||||
| Amp_8q24.13 | chr8:124301834–124488436 | |||||||
| Amp_8q24.13 | chr8:124529533–124985146 | ANXA13 | ||||||
| Amp_8q24.21 | chr8:128501258–129666438 | Amp_8q24.21 | chr8:128729001–128873001 | Amp_8q24.21 | chr8:129157821–129195260 | Amp_8q24.21 | chr8:129.18–129.34 | MYC, PVT1 |
| Del_11q24.3 | chr11:129705556–129762130 | Del_11q24.3-q25 | chr11:127528001–131659001 | |||||
| Del_21q21.1 | chr21:17559651–17823071 | Del_21q21.1 | chr21:1–32497730 | |||||
| Del_21q22.12-q22.13 | chr21:36356593–36821536 | CHAF1B, CBR1 | ||||||
| Del_21q22.2 | chr21:39568333–39679987 | |||||||