Table 1.
Summary statistics for assembly of five Juglans species chloroplast genomes.
| Genome features | Juglans regia | Juglans sigillata | Juglans hopeiensis | Juglans cathayensis | Juglans mandshurica |
|---|---|---|---|---|---|
| Size (bp) | 160367 | 160350 | 159714 | 159730 | 159729 |
| LSC length (bp) | 89872 | 89872 | 89316 | 89333 | 89331 |
| SSC length (bp) | 18423 | 18406 | 18352 | 18351 | 18352 |
| IR length (bp) | 26036 | 26036 | 26023 | 26023 | 26023 |
| Coding (bp) | 80475 | 80475 | 80202 | 80110 | 80344 |
| Noncoding (bp) | 79892 | 79875 | 79512 | 79620 | 79385 |
| Number of genes | 129 | 129 | 129 | 129 | 129 |
| Protein-coding genes | 88 | 88 | 88 | 88 | 88 |
| tRNA genes | 40 | 40 | 40 | 40 | 40 |
| rRNA genes | 8 | 8 | 8 | 8 | 8 |
| Number of genes duplicated in IR (rRNA/tRNA/gene/Pseudogenes) | 19 (4/7/7/1) | 19 (4/7/7/1) | 19 (4/7/7/1) | 19 (4/7/7/1) | 19 (4/7/7/1) |
| GC content (%) | 36.1 | 36.1 | 36.1 | 36.1 | 36.1 |
| GC content in LSC (%) | 33.6 | 33.6 | 33.6 | 33.7 | 33.7 |
| GC content in SSC (%) | 29.8 | 29.8 | 29.8 | 29.8 | 29.8 |
| GC content in IR (%) | 42.6 | 42.6 | 42.6 | 42.5 | 42.5 |
| Sequencing Platform | Illumina Miseq | Illumina HiSeq | Illumina HiSeq | Illumina HiSeq | Illumina HiSeq |
| Raw reads | 6321912 | 12382845 | 10285876 | 13320133 | 11903351 |
| Raw Base (G) | 1.9 | 3.1 | 2.57 | 3.33 | 2.98 |
| Average read length (bp) | 300 | 150 | 150 | 150 | 150 |
| Average insert size (bp) | 350 | 350 | 350 | 350 | 350 |
| Number of assembled reads | 1846010 | 804634 | 1118104 | 689686 | 1055940 |
| Source | Xi'an, Qinling | Lijiang, Yunnan | Laishui, Beijing | Lantian, Qinling | Xiaolongmen, Beijing |