Table 3. Differential expression status of the differentially expressed genes in nodulating genotypes with orthologs to previously characterized symbiosis genes.
| ID | Orthologous symbiosis-related genes | Gene name | Chromosome | E4 | E5 | E6 | E7 | F487A | PI262090 |
|---|---|---|---|---|---|---|---|---|---|
| XLOC_002328 | ENOD16 | Aradu.D9DNB | Aradu.A01 | no | no | UP** | no | no | UP** |
| XLOC_003129 | RIP1 | Aradu.X9PNA | Aradu.A01 | no | DOWN* | no | no | no | DOWN** |
| XLOC_025526 | ERN1 | XLOC_025526 | Aradu.A06 | no | no | no | no | UP** | no |
| XLOC_027005 | NIN | Aradu.46M2Y | Aradu.A07 | no | UP** | UP** | no | UP** | UP** |
| XLOC_031731 | CLE13 | XLOC_031731 | Aradu.A08 | no | UP** | UP** | no | UP** | UP** |
| XLOC_043348 | ENOD16 | Araip.AZY85 | Araip.B01 | no | no | no | no | UP** | no |
| XLOC_039690 | RIP1 | Araip.SHV7N | Araip.B01 | no | DOWN** | no | no | no | DOWN** |
| XLOC_050005 | NIN | Araip.38X68 | Araip.B03 | no | UP** | UP** | no | UP** | UP** |
| XLOC_057941 | NFR5 | Araip.NL2P7 | Araip.B05 | no | no | UP** | no | no | UP** |
| XLOC_066947 | ERN1 | XLOC_066947 | Araip.B06 | no | no | no | no | UP** | no |
| XLOC_071109 | NSP2 | XLOC_071109 | Araip.B07 | no | no | UP** | no | no | no |
| XLOC_075006 | CLE13 | XLOC_075006 | Araip.B08 | no | UP** | no | no | UP** | UP** |
Note: The last six columns show the comparison of ‘control’ and ‘treatment’ samples for the six genotypes. ‘UP’ indicates up-regulation; ‘DOWN’ indicates down-regulation. ‘*’: less than two-fold change; ‘**’ two-fold change or more.