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. 2016 Oct 28;7(1):41–53. doi: 10.1534/g3.116.035584

Table 4. Comparison of prediction accuracy of multi-environment GBLUP and GK model (3) with various other models published in refereed journals for the five data sets utilized in this study.

GBLUP GK
Wheat Data Set 1 FA Model (3) EB-G × E Model (3)
E1 0.553 0.543 0.458 0.606
E2 0.611 0.720 0.644 0.713
E3 0.585 0.694 0.586 0.694
E4 0.51 0.525 0.543 0.572
GBLUP GK
Maize Data Set 2 EB-G × E Model (2) EB-G × E Model (3)
E1 0.618 0.624 0.630 0.645
E2 0.547 0.575 0.566 0.582
E3 0.519 0.525 0.556 0.578
GBLUP GK
Wheat Data Set 3 GBLUP-ME Model (3) Model (3)
E1 0.591 0.617 0.631
E2 0.697 0.716 0.689
E3 0.505 0.512 0.551
E4 0.516 0.507 0.51
GBLUP GK
Wheat Data Set 4 GBLUP-ME Model (3) Model (3)
E1 0.513 0.601 0.616
E2 0.536 0.588 0.587
E3 0.531 0.609 0.613
E4 0.561 0.611 0.607
GBLUP GK
Wheat Data Set 5 GBLUP-ME Model (3)
E1 0.575 0.583 0.637
E2 0.466 0.458 0.518
E3 0.629 0.632 0.688
E4 0.402 0.608 0.630
E5 0.376 0.596 0.597

FA (Factor Analytic) model, Burgueño et al. (2012); EB (Empirical Bayes)-G × E, Cuevas et al. (2016); GBLUP-ME, López-Cruz et al. (2015); The highest correlations in each row are in boldface. GBLUP, genomic best linear unbiased predictors: GK, Gaussian kernel.