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. 2016 Oct 31;7(1):63–75. doi: 10.1534/g3.116.035329

Table 1. Transcription alterations under stress conditions.

Stress Comparison Number of Genes of First Type (%) Number of Genes of Second Type (%) Odds Ratio (F) Probability
Ethanol Da vs. Sb 907 (40.5%) 1341 (29.3%) 1.64 <2.2 × 10−16
WGDsc vs. S 515 (47.6%) 1341 (29.3%) 2.12 <2.2 × 10−16
SSDsd vs. S 392 (33.9%) 1341 (29.3%) 1.27 8.1 × 10−4
WGDs vs. SSDs 515 (47.6%) 392 (33.9%) 1.68 2.7 × 10−9
Glycerol D vs. S 1134 (50.6%) 1693 (36.9%) 1.75 <2.2 × 10−16
WGDs vs. S 617 (56.9%) 1693 (36.9%) 2.18 <2.2 × 10−16
SSDs vs. S 517 (44.7%) 1693 (36.9%) 1.41 2.3 × 10−7
WGDs vs. SSDs 617 (56.9%) 517 (44.7%) 1.10 0.21
Lactate D vs. S 1038 (46.3%) 1471 (32.1%) 1.83 <2.2 × 10−16
WGDs vs. S 571 (52.7%) 1471 (32.1%) 2.28 <2.2 × 10−16
SSDs vs. S 467 (40.4%) 1471 (32.1%) 1.47 2.6 × 10−8
WGDs vs. SSDs 571 (52.7%) 467 (40.4%) 1.56 2.3 × 10−7
Oxidative D vs. S 42 (1.9%) 59 (1.3%) 1.46 0.06
WGDs vs. S 29 (2.7%) 59 (1.3%) 2.07 0.002
SSDs vs. S 12 (1.1%) 59 (1.3%) 0.82 0.65
WGDs vs. SSDs 29 (2.7%) 12 (1.1%) 2.54 0.007
Oxidative + dextrose D vs. S 1064 (47.5%) 1574 (34.4%) 1.73 <2.2 × 10−16
WGDs vs. S 589 (54.4%) 1574 (34.4%) 2.20 <2.2 × 10−16
SSDs vs. S 475 (41.1%) 1574 (34.4%) 1.36 5.1 × 10−6
WGDs vs. SSDs 589 (54.4%) 475 (41.1%) 1.61 2.2 × 10−8
a

Duplicated genes.

b

Singleton genes.

c

Whole-genome duplicates.

d

Small-scale duplicates.