Table 3.
Genome features of X. translucens strains
Straina | X. t. pv. graminis Xtg29 | X. t. pv. graminis Xtg2 | X. t. pv. graminis Xtg9 | X. t. pv. graminis Xtg10 | X. t. pv. graminis NCPPB 3709 | X. t. pv. graminis ICMP 6431 | X. t. pv. graminis CFBP 2053PT* | X. t. pv. arrhenatheri LMG 727PT* | X. t. pv. poae LMG 728PT* | X. t. pv. phlei LMG 730PT* | X. t. pv. cerealis CFBP 2541PT* | X. t. pv. undulosa Xtu4699* | X. t. pv. translucens DSM 18974T* | X. t. DAR61454* |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Attribute | ||||||||||||||
Genome size | 4.2 Mb | 4.2 Mb | 4.1 Mb | 4.2 Mb | 4.2 Mb | 4.1 Mb | 4.3 Mb | 4.8 Mb | 4.6 Mb | 4.4 Mb | 4.5 Mb | 4.6 Mb | 4.7 Mb | 4.5 Mb |
Protein coding genes | 3543 | 3529 | 3519 | 3529 | 3553 | 3487 | 3851 | 3871 | 3845 | 3744 | 3888 | 3835 | 3957 | 3776 |
Genes with function prediction | 2328 | 2323 | 2317 | 2326 | 2367 | 2297 | 2572 | 2531 | 2505 | 2477 | 2466 | 2540 | 2586 | 2439 |
Genes with Pfam domains | 2795 | 2795 | 2788 | 2789 | 2825 | 2749 | 3069 | 3062 | 3009 | 2980 | 2965 | 3055 | 3091 | 2907 |
Genes with transmembrane helices | 877 | 876 | 866 | 867 | 887 | 865 | 936 | 953 | 933 | 918 | 910 | 894 | 951 | 851 |
Genes with signal peptides | 549 | 551 | 555 | 554 | 551 | 545 | 553 | 584 | 584 | 552 | 521 | 531 | 563 | 521 |
a Pathotype strains (PT) and the X. translucens type strain (T) are indicated. Data obtained by using the same annotation strategy as applied for the six Xtg strains (Xtg29, Xtg2, Xtg9, Xtg10, NCPPB 3709 and ICMP 6431) sequenced in this study are indicted by asterisks (*)