Table 1.

A list of published quantitative proteomics papers in the field of crop plant responses to abiotic stress factors which employ different genotypes of common crop cultivars. Columns indicate the crop plant, stress condition, genotypes compared, age of plant at end of stress treatment, duration of stress treatment, tissue studied, methods of quantitative proteomics used, number of biological replicates, type of protein sampling, and whether the proteomic results were further validated.

Crop	Stress	Genotypes	Plant Age	Stress Duration	Plant Tissue	Quant. Method a	# Biol. Reps. b	Protein Extraction	Val. c	Ref.
Corn	Drought–dehydration	CE704–tolerant, 2023–resistant	40 days	6 days	Leaves	iTRAQ/2DGE	NS/3	total protein	No	[14]
	Drought–water deficit	Lc–sensitive, Io–tolerant	3 weeks old	4, 6, 8, 10, 12, 14 days	Leaves	2DGE	3 or 5	total protein	No	[15]
	UV-B irradiation	W23–sensitive, Cacahuacintle-tolerant, Confite Puneño–tolerant	28 days	21 days	Leaves	DIGE	3	total protein	Yes	[16]
Wheat	Drought	Excalibur-tolerant, RAC875-tolerant, Kukri-sensitive	adult plants unknown age	cyclic	Leaves	iTRAQ	1	total protein	No	[17]
	ABA	Nesser–tolerant, Opata–sensitive	10 day old seedlings	6 h	Roots	iTRAQ	3	total protein	Yes	[18]
	Drought	Hanxuan10–tolerant, Chinese Spring–sensitive	seedlings	48 h	roots, leaves and sections including leaf sheath and stem	2DGE	3	total protein	No	[19]
	Salt 200 mM	CS–sensitive, AMP–tolerant	7 weeks	7 weeks	Shoots/Roots	DIGE	3	mitochondria	No	[20]
	Drought, heat, salt, cold	China-108, Yennon-78, Norin-61, Kantou-107	4 months	N.S.	Seeds	2DGE	1	total protein	No	[21]
	Drought and salt	Shanrong 3–tolerant, Jinan 177–sensitive	seedlings	24 h	Shoots/Roots	2DGE	3	total protein	No	[22]
Rice	Drought	Zhenshan97B–susceptible, IRAT109–tolerant	50 days	20 days	Leaves	2DGE	NS	total protein	No	[23]
	Drought	IR62266–tolerant, CT9993–sensitive	up to 53 days	various	Leaves	2DGE	NS	total protein	No	[24]
	Drought	KDML105–unknown, NSG19–tolerant, IR20–sensitive	25 days	up to 96 h	Leaves	1DGE	3	total protein	No	[25]
	Salinity 100 mM	Pokkali–tolerant, IR29–sensitive	28 days	14 days	Roots	2DGE	3	total protein	No	[24]
	Nitrogen deficiency	Chunyou 58–tolerant Yongyou 6–sensitive	4th leaf	up to 7 days	Leaves	2DGE	3	total protein	No	[26]
Soybean	Aluminium	PI416937–tolerant, Young–sensitive	seedlings	up to 72 h	Roots	DIGE	NS	total protein	No	[27]
	UV-B irradiation	Clark–tolerant, Magenta–sensitive	12 days	9 days	Seedlings	2DGE	5	total protein	No	[28]
	Salinity 150 mM	Jackson–sensitive, Lee–tolerant	21 days	up to 144 h	Leaves	2DGE	3	total protein	No	[29]
Barley	Salinity 50–250 mM	Morex–tolerant, Steptoe–sensitive	seedlings	13 days	Roots	2DGE IPG 3–10	3	total protein	yes	[30]
	Salinity 100–150 mM	Morex–tolerant, Steptoe–sensitive	seedlings	up to 16 days	Roots	2DGE IPG 4–7	3	total protein	yes	[31]
	Salinity 300 mM	Afzal–tolerant, Line 527–sensitive	seedlings	4 days	Leaves	2DGE	3	total protein	No	[32]
	Salinity 300 mM	Afzal–tolerant, Line 527–sensitive	7 weeks	3 weeks	Leaves	2DGE	NS	total protein	No	[33]
	Drought	004223–tolerant, 004186–sensitive	6 day old seedlings	3 days	Shoots	2DGE	3	total protein	No	[34]
	Drought	Arta–tolerant, Keel–tolerant	33 days	7 days	Leaves	DIGE	3	total protein	No	[35]
	Boron	DH +-tolerant, DH-–sensitive	seedlings	2 weeks	Roots	iTRAQ	2	soluble protein	No	[36]
	Drought	15141–tolerant, 15163–sensitive	Seedlings–unknown age	7 days	Leaves	DIGE	3	total protein	No	[37]
Brassica	Low phosphorus	102–tolerant, 105–sensitive	41 days	26 days	Leaves/Roots	2DGE	3	total protein	No	[38]
Peanut	Drought–water deficit	COC041-tolerant, COC166-sensitive	74 days	7 days	Leaves	2DGE	3	total protein	Yes	[39]
Sugar cane	Drought	K86-161-tolerant, KhonKhan-sensitive	15 weeks	21 days	Leaves	2DGE	NS	total protein	Yes	[40]
Strawberry	Cold	Frida-sensitive, Jonsok-tolerant	8 weeks + hardening 2–48 days	48 h	Crowns	2DGE and LFQP	3	total protein	No	[41]
Sugar beet	Drought	7112 7219	157 days	N.S.	Leaves	2DGE	10	total protein	No	[42]
Tomato	Salinity 100 mM	Roma–tolerant, Supermarmande–sensitive	24 days	14 days	Leaves	2DGE	4	total protein	No	[43]
Chickpea	Drought	JG-62–tolerant, ICCV-2–sensitive	27 days	1–6 days	Shoots	2DGE	2	nuclei	No	[44]
Grape	Drought and Salinity (250 mM final)	Chardonnay–tolerant, Cabernet Sauvignon–sensitive	Two-year-old rooted cuttings	up to 16 days	Shoots	2DGE	3	total protein	No	[45]
Banana	Drought (sorbitol)	Mbwazirume Williams Popoulou Obino L’Ewai Cachaco	4 week old explants	48 days	Leaves	DIGE	6	total protein	No	[46]

^a Quantification method; ^b Number of biological replicates; ^c Validation; NS, Not stated in manuscript.