Fig. 2.

Graphical User Interphase of GenomeCAT in the Single View mode. Array CGH results for part of chromosome 6 in a patient with cutaneous T-cell lymphoma are depicted as familiar ratio plot together with a track highlighting the aberrant segments as detected by CBS analysis (black bars). Additionally, oligos with ratios beyond custom-defined thresholds are coloured in red and green, respectively. Note that chromosomal breakpoints correlate with transition from gene rich to gene poor regions as visualized by annotation track C right to the chromosome ideogram