TABLE 4.

Hierarchical individual-level estimates for each patient, with HXB2 without V3 used as the outgroup^a

i	τi (tree)			κ1i	κ2i	αi	μi × 100	πi
	R	X	O					A	G	C	T
9	0.95	0.04	<0.01	3.3 (0.50)	2.4 (0.47)	0.38 (0.14)	5.4 (2.2)	0.38	0.21	0.16	0.24
28	>0.99	<0.01	<0.01	3.5 (0.54)	2.6 (0.53)	0.40 (0.19)	5.1 (2.0)	0.37	0.22	0.17	0.24
17	>0.99	<0.01	<0.01	3.1 (0.53)	1.8 (0.44)	0.68 (0.76)	4.5 (1.9)	0.38	0.21	0.16	0.25

^aThe V3 loop was deleted from all sequences. For each patient i, the estimates of τ_i are posterior probabilities of each possible tree (R, X, and O); estimates of κ_1i, κ_2i, and μ_i are posterior means with the standard deviations shown in parentheses; and estimates of π_i are posterior means.