TABLE 5.

Analysis of the data with each patient treated independently and with sequence data for each time point concatenated so that a single evolutionary tree is created^a

Analysis type	τi (tree)			κ1i	κ2i	αi	μi × 100	πi
	R	X	O					A	G	C	T
Patient treated independently (i)
9	0.44	0.40	0.16	3.1 (0.51)	2.5 (0.51)	0.37 (0.16)	7.0 (4.2)	0.39	0.21	0.16	0.24
28	>0.99	<0.01	<0.01	3.5 (0.58)	3.1 (0.62)	0.49 (0.40)	6.2 (3.7)	0.38	0.22	0.17	0.24
17	>0.99	<0.01	<0.01	2.9 (0.58)	1.4 (0.39)	55.6 (415.5)	4.6 (2.8)	0.38	0.21	0.16	0.24
Sequence data concatenated
	>0.99	<0.01	<0.01	3.2 (0.32)	2.3 (0.30)	0.33 (0.08)	6.0 (3.4)	0.38	0.21	0.16	0.24

^aFor each patient i, τ_i is the estimated posterior probability for each possible tree. Estimates for κ_1i, κ_2i, α_i, and μ_i are posterior means with standard deviations in parentheses and estimates of π_i are posterior means.