Table 3.
Proteins involved in sugar catabolism and TCA cycle
| Protein | Description | 1D-LC | 2D-LC | Regulation | Run | Matching |
|---|---|---|---|---|---|---|
| AceE | Pyruvate dehydrogenase E1 component | 0.62 | DOWN | 2-3 | Both | |
| AceF | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase | 1.64 | 1.65 | UP | 2-3/1-3 | Both |
| AcnA | Aconitate hydratase | 0.44 | DOWN | All | Both | |
| Eno | Enolase | 0.60 | DOWN | 1-2 | Both | |
| FrdA | Fumarate reductase flavoprotein subunit | 0.39 | 0.35 | DOWN | All | Both |
| FrdB | Fumarate reductase iron-sulfur subunit | 0.44 | 0.36 | DOWN | All/1-2 | Both |
| FruB | Bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein | 1.89 | UP | 2-3 | Both | |
| FumA | Fumarate hydratase FumB | 0.26 | DOWN | 2-3 | Both | |
| GalU | UTP--glucose-1-phosphate uridylyltransferase subunit GalU | 0.65 | 0.55 | DOWN | All | Both |
| GapA | Glyceraldehyde-3-phosphate dehydrogenase A | 1.36 | UP | 1-2 | H10407 | |
| GapC | Glyceraldehyde-3-phosphate dehydrogenase | 0.30 | 0.27 | DOWN | 2-3/All | Both |
| GlpK | Glycerol kinase | 0.31 | 0.31 | DOWN | All | Both |
| GltA | Citrate synthase | 1.62 | 1.74 | UP | 2-3/All | Both |
| Gnd | 6-phosphogluconate dehydrogenase, decarboxylating | 0.43 | 0.52 | DOWN | 2-3 | Both |
| GpmA | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase | 1.70 | 1.78 | UP | 2-3 | Both |
| Icd | Isocitrate dehydrogenase [NADP] | 0.87 | DOWN | All | Top | |
| MaeA | NAD-dependent malic enzyme | 0.62 | DOWN | All | H10407 | |
| MaeB | Bifunctional malic enzyme oxidoreductase/phosphotransacetylase | 2.07 | UP | 2-3 | Both | |
| MalE | Extracellular solute-binding protein family 1 | 2.03 | 2.50 | UP | All | Both |
| MalK | Maltose/maltodextrin transporter ATP-binding protein | 2.03 | UP | 1-3 | Both | |
| MalM | Maltose operon periplasmic | 1.85 | 1.88 | UP | All/2-3 | Top |
| MalX | Maltose transport system, substrate-binding protein | 2.03 | 2.50 | UP | All | H10407 |
| ManXYZ | PTS system mannose-specific transporter subunits IIAB | 0.69 | DOWN | 1-3 | Top | |
| MglB | Methyl-galactoside ABC transporter galactose-binding periplasmic protein | 3.70 | UP | 1-2 | Both | |
| PfkA | 6-phosphofructokinase | 0.48 | 0.41 | DOWN | All/2-3 | Both |
| PflB | Pyruvate formate lyase I | 0.42 | 0.36 | DOWN | 1-2 | Both |
| Pgm | Phosphoglucomutase | 0.43 | DOWN | 1-3 | Both | |
| PoxB | Pyruvate dehydrogenase | 0.28 | 0.08 | DOWN | All/2-3 | Both |
| Pps | Phosphoenolpyruvate synthase | 0.62 | 0.60 | DOWN | All/1-2 | Top |
| PpsA | Phosphoenolpyruvate synthase | 0.62 | 0.60 | DOWN | All/1-2 | H10407 |
| PtsI | Phosphoenolpyruvate-protein phosphotransferase | 0.95 | DOWN | All | Both | |
| PykF | Pyruvate kinase | 0.54 | 0.41 | DOWN | All | Both |
| SucA | Succinyl-CoA ligase [ADP-forming] subunit alpha | 0.52 | 0.45 | DOWN | All | H10407 |
| SucC | Succinyl-CoA ligase [ADP-forming] subunit beta | 0.39 | DOWN | 2-3 | Both | |
| SucD | Succinyl-CoA ligase [ADP-forming] subunit alpha | 0.56 | 0.45 | DOWN | 1-2/All | Top |
| TktA | Transketolase | 0.52 | 0.47 | DOWN | All | Both |
| TktB | Transketolase | 0.52 | 0.49 | DOWN | 2-3/1-2 | Both |
| TreB | PTS system trehalose(Maltose)-specific transporter subunits IIBC | 2.01 | 2.07 | UP | 2-3/All | Both |
| Zwf | Glucose-6-phosphate 1-dehydrogenase | 2.23 | 2.54 | UP | 2-3 | Both |
Fold changes are listed under 1D-LC and 2D-LC columns