Table 2. Functional annotation analysis of liver genes using the DAVID tool.
GO terms in the Biological Process ontology | n | adj p-value | FE |
---|---|---|---|
GO:0042493~response to drug | 23 | 1.9E-08 | 6.0 |
GO:0055114~oxidation-reduction process | 24 | 2.1E-07 | 4.9 |
GO:0006457~protein folding | 11 | 3.0E-06 | 12.9 |
GO:0071353~cellular response to interleukin-4 | 7 | 7.8E-06 | 34.2 |
GO:0006412~translation | 16 | 1.3E-05 | 5.9 |
GO:0006749~glutathione metabolic process | 8 | 1.1E-05 | 21.1 |
GO:0001889~liver development | 10 | 9.9E-05 | 9.6 |
GO:0045471~response to ethanol | 10 | 6.8E-04 | 7.5 |
GO:0006641~triglyceride metabolic process | 6 | 6.6E-04 | 21.4 |
GO:0006979~response to oxidative stress | 9 | 7.6E-04 | 8.5 |
KEGG pathway annotation | n | adj p-value | FE |
rno01100:Metabolic pathways | 55 | 1.4E-12 | 2.9 |
rno01130:Biosynthesis of antibiotics | 19 | 1.7E-07 | 5.8 |
rno04141:Protein processing in endoplasmic reticulum | 16 | 7.1E-07 | 6.5 |
rno01230:Biosynthesis of amino acids | 12 | 9.4E-07 | 9.8 |
rno01200:Carbon metabolism | 13 | 4.2E-06 | 7.3 |
rno03010:Ribosome | 14 | 2.6E-05 | 5.5 |
rno00071:Fatty acid degradation | 8 | 9.1E-05 | 11.5 |
rno00280:Valine, leucine and isoleucine degradation | 8 | 2.3E-04 | 9.8 |
rno04146:Peroxisome | 9 | 4.7E-04 | 7.1 |
rno00410:beta-Alanine metabolism | 6 | 1.7E-03 | 11.9 |
The rat genome was used as a background list to calculate the p-values of each term. A total of 131 genes were recognised. The p-values were calculated according to a modified Fisher’s exact test (EASE score) and adjusted according to the Benjamini-Hochberg method. The fold enrichment (FE) of the statistically most overrepresented (enriched) GO biological process and KEGG pathway terms are presented.