Table 1. General features of the genome.
Chromosome | pNF1 | pNF2 | |
---|---|---|---|
Topology | Circular | Circular | Circular |
Length, bp | 6,021,225 | 184,027 | 87,093 |
G+C content, % | 70.8 | 67.2 | 68.4 |
Copy no.* | 1 | 0.7 | 1.8 |
Protein-coding gene | 5,674 | 160 | 90 |
Average CDS length, bp | 960 | 963 | 832 |
Coding density, % | 90.4 | 83.7 | 86.0 |
Function assigned | 2,962 (52.2%) | 53 (33.1%) | 23 (25.6%) |
Matched to hypothetical protein | 1,533 (27.0%) | 37 (23.1%) | 26 (28.9%) |
No database match | 1,179 (20.8%) | 70 (43.8%) | 41 (45.5%) |
rrn operon | 3 | 0 | 0 |
tRNA gene | 53 | 0 | 0 |
CDS, protein-coding sequences.
The copy numbers of pNF1 and pNF2 were estimated from the statistical distribution of random reads between the plasmids and the chromosome.