. 2017 Jan 1;24(1):52–67. doi: 10.1089/cmb.2016.0145

Table 1.

Averaged Radial Distance Between Backbone Centroids and the Helix Axis That Is Either Calculated From the PDB Structure or Assigned to the Simulated Density Map

		PDB			Sensitivity (%)^f
Index^a	Helix ID^b	r100^c	r80^d	Image r80^e	S_2.0	S_2.5	S_3.0
1	1FLP_1_4-19	1.99	1.98	2.40	53.33	86.67	100.00
2	1HZ4_6_107-123	1.96	1.95	1.86	93.75	100.00	100.00
3	3E46_7_160-171	2.02	1.96	2.24	63.64	100.00	100.00
4	1HZ4_4_67-83	1.97	1.96	2.08	81.25	100.00	100.00
5	1NG6_9_136-146	2.06	1.97	1.98	90.00	100.00	100.00
6	2OVJ_3_390-401	2.00	1.98	2.10	72.73	100.00	100.00
7	3E46_9_190-199	2.02	1.97	2.00	66.67	100.00	100.00
8	1NG6_1_3-16	1.99	1.96	2.24	69.23	100.00	100.00
9	2OVJ_9_493-504	2.08	2.06	2.50	45.45	90.91	100.00
10	1HZ4_12_209-225	1.97	1.96	2.39	62.50	93.75	100.00
11	2OVJ_10_514-533	2.08	1.95	2.28	63.16	94.74	100.00
12	3IEE_1_33-56	2.03	1.96	2.27	56.52	95.65	100.00
13	1NG6_3_47-71	2.08	1.97	2.03	75.00	100.00	100.00
14	3E46_4_106-118	2.10	1.96	2.13	75.00	100.00	100.00
15	1NG6_6_97-110	1.99	1.95	2.35	69.23	84.62	100.00
16	1LWB_2_17-28	2.07	1.96	2.17	72.73	100.00	100.00
17	3IEE_5_139-178	2.23	1.97	2.05	71.05	97.37	100.00
18	1HZ4_20_334-346	2.02	1.99	2.29	58.33	91.67	100.00
19	1FLP_2_21-35	2.05	2.00	2.50	64.29	85.71	85.71
20	3E46_8_176-185	2.10	1.95	2.25	44.44	100.00	100.00
21	1HG5_10_229-257	2.15	1.95	2.22	82.14	96.43	100.00
22	1HZ4_1_5-24	1.99	1.96	2.00	84.21	100.00	100.00
23	1NG6_4-5_74-90	2.04	1.95	1.92	87.50	100.00	100.00
24	1FLP_9-10_124-141	2.13	2.00	2.56	47.06	76.47	100.00
25	1NG6_2_20-39	2.00	1.95	2.13	73.68	94.74	100.00
26	3IEE_2_59-72	2.21	2.02	2.18	58.33	91.67	91.67
27	1FLP_6_82-97	2.00	1.94	2.32	53.33	100.00	100.00
28	1FLP_5_59-76	2.00	1.97	2.07	64.71	94.12	94.12
29	1UNF_7_125-138	2.05	1.98	2.28	84.62	100.00	100.00
30	1LWB_5_77-96	2.18	1.96	2.25	68.42	89.47	100.00
31	1HG5_9_191-221	2.06	1.97	1.93	86.67	96.67	100.00
32	1UNF_13_223-237	2.14	1.97	2.28	64.29	100.00	100.00
33	1HZ4_17_287-304	2.14	1.95	2.26	76.47	94.12	100.00
34	1HZ4_3_47-64	2.04	1.94	2.30	70.59	88.24	94.12
35	1FLP_7-8_103-120	2.04	1.97	2.22	70.59	94.12	100.00
36	1HZ4_11_188-202	1.98	1.94	2.01	71.43	92.86	100.00
37	1LWB_4_58-74	2.09	1.98	2.22	68.75	87.50	93.75
38	1HG5_3_56-66	2.00	1.97	1.96	90.00	100.00	100.00
39	2OVJ_7_451-463	2.06	1.97	2.30	66.67	83.33	100.00
40	3E46_1_3-18	2.15	1.97	2.26	60.00	93.33	100.00
41	2OVJ_2_364-376	2.14	2.03	2.28	66.67	91.67	100.00
42	1UNF_3-4_69-80	2.03	1.93	2.71	63.64	63.64	90.91
43	2OVJ_8_467-485	1.99	1.97	2.27	61.11	94.44	100.00
44	2OVJ_11-12_536-543	2.04	1.97	2.99	28.57	85.71	100.00
45	1HG5_5_91-99	2.05	2.00	4.10	62.50	87.50	87.50
46	1HZ4_16_267-283	1.98	1.96	2.02	81.25	87.50	100.00
47	1HZ4_8_149-162	2.00	1.94	2.02	84.62	100.00	100.00
48	1LWB_6_101-119	2.11	1.96	2.81	50.00	77.78	83.33
49	1HZ4_18_307-324	2.06	1.95	2.35	82.35	88.24	100.00
50	1NG6_7-8_116-130	2.13	2.03	2.66	42.86	78.57	92.86
51	1HG5_6_115-141	2.08	1.99	2.07	76.92	96.15	96.15
52	3E46_6_138-153	2.68	1.99	3.39	53.33	73.33	80.00
53	1UNF_12_209-219	2.14	1.99	2.62	50.00	80.00	90.00
54	3IEE_8_240-263	2.25	1.97	2.03	77.27	95.45	100.00
55	3E46_5_128-136	2.04	1.96	5.23	25.00	62.50	62.50
56	3IEE_9_271-284	2.24	1.96	4.66	41.67	58.33	58.33
57	3IEE_4_103-135	2.02	1.99	2.14	75.00	90.63	100.00
58	1HG5_2_39-49	2.00	1.94	1.93	90.00	100.00	100.00
59	1HZ4_9-10_168-185	2.10	1.97	2.52	64.71	76.47	100.00
60	1HG5_4_72-88	2.09	1.98	2.69	62.50	75.00	87.50
61	3IEE_6_185-205	2.27	2.20	2.31	58.82	88.24	100.00
62	3IEE_7_213-231	2.02	1.97	2.11	72.22	83.33	94.44
63	2OVJ_5_415-427	1.98	1.95	2.09	75.00	100.00	100.00
64	1LWB_1_5-11	2.02	1.95	1.96	100.00	100.00	100.00
65	1HG5_1_20-29	2.07	2.00	2.50	66.67	88.89	100.00
66	1HZ4_5_87-103	2.05	1.95	2.17	68.75	93.75	100.00
67	1FLP_3_37-41	2.11	2.06	2.13	75.00	100.00	100.00
68	1UNF_5_85-100	2.05	2.01	2.96	33.33	53.33	80.00
69	1UNF_2_47-58	2.00	1.97	2.31	63.64	100.00	100.00
70	1HG5_7_161-179	2.08	1.91	2.18	66.67	94.44	100.00
71	2OVJ_6_439-447	2.10	1.95	2.45	87.50	100.00	100.00
Average values:		2.07	1.97	2.37	67.40	90.97	96.66

Results computed with SSETracer.

^{^a}

Index of the data as it appears in Figures 4 and 5. Sorted approximately by longitudinal discrepancy.

^{^b}

PDB ID, the chain ID in the PDB file, the helix ID, and the first and last amino acid index. Sequentially adjacent helices that share same direction are combined.

^{^c}

Averaged amino acid backbone centroid distance from the axis.

^{^d}

Radius for 80% of helix centroids to be within the radial distance from the axis calculated from PDB file.

^{^e}

Radius for 80% of helix centroids to be within the radial distance from the axis detected from the density image using SSETracer.

^{^f}

Sensitivity calculated as A/B using a specified radius threshold, where A is the number of detected AAs and B is the total number of AAs of the helix.

PDB, Protein Data Bank.