Table 1.
Averaged Radial Distance Between Backbone Centroids and the Helix Axis That Is Either Calculated From the PDB Structure or Assigned to the Simulated Density Map
PDB | Sensitivity (%)f | ||||||
---|---|---|---|---|---|---|---|
Indexa | Helix IDb | r100c | r80d | Image r80e | S2.0 | S2.5 | S3.0 |
1 | 1FLP_1_4-19 | 1.99 | 1.98 | 2.40 | 53.33 | 86.67 | 100.00 |
2 | 1HZ4_6_107-123 | 1.96 | 1.95 | 1.86 | 93.75 | 100.00 | 100.00 |
3 | 3E46_7_160-171 | 2.02 | 1.96 | 2.24 | 63.64 | 100.00 | 100.00 |
4 | 1HZ4_4_67-83 | 1.97 | 1.96 | 2.08 | 81.25 | 100.00 | 100.00 |
5 | 1NG6_9_136-146 | 2.06 | 1.97 | 1.98 | 90.00 | 100.00 | 100.00 |
6 | 2OVJ_3_390-401 | 2.00 | 1.98 | 2.10 | 72.73 | 100.00 | 100.00 |
7 | 3E46_9_190-199 | 2.02 | 1.97 | 2.00 | 66.67 | 100.00 | 100.00 |
8 | 1NG6_1_3-16 | 1.99 | 1.96 | 2.24 | 69.23 | 100.00 | 100.00 |
9 | 2OVJ_9_493-504 | 2.08 | 2.06 | 2.50 | 45.45 | 90.91 | 100.00 |
10 | 1HZ4_12_209-225 | 1.97 | 1.96 | 2.39 | 62.50 | 93.75 | 100.00 |
11 | 2OVJ_10_514-533 | 2.08 | 1.95 | 2.28 | 63.16 | 94.74 | 100.00 |
12 | 3IEE_1_33-56 | 2.03 | 1.96 | 2.27 | 56.52 | 95.65 | 100.00 |
13 | 1NG6_3_47-71 | 2.08 | 1.97 | 2.03 | 75.00 | 100.00 | 100.00 |
14 | 3E46_4_106-118 | 2.10 | 1.96 | 2.13 | 75.00 | 100.00 | 100.00 |
15 | 1NG6_6_97-110 | 1.99 | 1.95 | 2.35 | 69.23 | 84.62 | 100.00 |
16 | 1LWB_2_17-28 | 2.07 | 1.96 | 2.17 | 72.73 | 100.00 | 100.00 |
17 | 3IEE_5_139-178 | 2.23 | 1.97 | 2.05 | 71.05 | 97.37 | 100.00 |
18 | 1HZ4_20_334-346 | 2.02 | 1.99 | 2.29 | 58.33 | 91.67 | 100.00 |
19 | 1FLP_2_21-35 | 2.05 | 2.00 | 2.50 | 64.29 | 85.71 | 85.71 |
20 | 3E46_8_176-185 | 2.10 | 1.95 | 2.25 | 44.44 | 100.00 | 100.00 |
21 | 1HG5_10_229-257 | 2.15 | 1.95 | 2.22 | 82.14 | 96.43 | 100.00 |
22 | 1HZ4_1_5-24 | 1.99 | 1.96 | 2.00 | 84.21 | 100.00 | 100.00 |
23 | 1NG6_4-5_74-90 | 2.04 | 1.95 | 1.92 | 87.50 | 100.00 | 100.00 |
24 | 1FLP_9-10_124-141 | 2.13 | 2.00 | 2.56 | 47.06 | 76.47 | 100.00 |
25 | 1NG6_2_20-39 | 2.00 | 1.95 | 2.13 | 73.68 | 94.74 | 100.00 |
26 | 3IEE_2_59-72 | 2.21 | 2.02 | 2.18 | 58.33 | 91.67 | 91.67 |
27 | 1FLP_6_82-97 | 2.00 | 1.94 | 2.32 | 53.33 | 100.00 | 100.00 |
28 | 1FLP_5_59-76 | 2.00 | 1.97 | 2.07 | 64.71 | 94.12 | 94.12 |
29 | 1UNF_7_125-138 | 2.05 | 1.98 | 2.28 | 84.62 | 100.00 | 100.00 |
30 | 1LWB_5_77-96 | 2.18 | 1.96 | 2.25 | 68.42 | 89.47 | 100.00 |
31 | 1HG5_9_191-221 | 2.06 | 1.97 | 1.93 | 86.67 | 96.67 | 100.00 |
32 | 1UNF_13_223-237 | 2.14 | 1.97 | 2.28 | 64.29 | 100.00 | 100.00 |
33 | 1HZ4_17_287-304 | 2.14 | 1.95 | 2.26 | 76.47 | 94.12 | 100.00 |
34 | 1HZ4_3_47-64 | 2.04 | 1.94 | 2.30 | 70.59 | 88.24 | 94.12 |
35 | 1FLP_7-8_103-120 | 2.04 | 1.97 | 2.22 | 70.59 | 94.12 | 100.00 |
36 | 1HZ4_11_188-202 | 1.98 | 1.94 | 2.01 | 71.43 | 92.86 | 100.00 |
37 | 1LWB_4_58-74 | 2.09 | 1.98 | 2.22 | 68.75 | 87.50 | 93.75 |
38 | 1HG5_3_56-66 | 2.00 | 1.97 | 1.96 | 90.00 | 100.00 | 100.00 |
39 | 2OVJ_7_451-463 | 2.06 | 1.97 | 2.30 | 66.67 | 83.33 | 100.00 |
40 | 3E46_1_3-18 | 2.15 | 1.97 | 2.26 | 60.00 | 93.33 | 100.00 |
41 | 2OVJ_2_364-376 | 2.14 | 2.03 | 2.28 | 66.67 | 91.67 | 100.00 |
42 | 1UNF_3-4_69-80 | 2.03 | 1.93 | 2.71 | 63.64 | 63.64 | 90.91 |
43 | 2OVJ_8_467-485 | 1.99 | 1.97 | 2.27 | 61.11 | 94.44 | 100.00 |
44 | 2OVJ_11-12_536-543 | 2.04 | 1.97 | 2.99 | 28.57 | 85.71 | 100.00 |
45 | 1HG5_5_91-99 | 2.05 | 2.00 | 4.10 | 62.50 | 87.50 | 87.50 |
46 | 1HZ4_16_267-283 | 1.98 | 1.96 | 2.02 | 81.25 | 87.50 | 100.00 |
47 | 1HZ4_8_149-162 | 2.00 | 1.94 | 2.02 | 84.62 | 100.00 | 100.00 |
48 | 1LWB_6_101-119 | 2.11 | 1.96 | 2.81 | 50.00 | 77.78 | 83.33 |
49 | 1HZ4_18_307-324 | 2.06 | 1.95 | 2.35 | 82.35 | 88.24 | 100.00 |
50 | 1NG6_7-8_116-130 | 2.13 | 2.03 | 2.66 | 42.86 | 78.57 | 92.86 |
51 | 1HG5_6_115-141 | 2.08 | 1.99 | 2.07 | 76.92 | 96.15 | 96.15 |
52 | 3E46_6_138-153 | 2.68 | 1.99 | 3.39 | 53.33 | 73.33 | 80.00 |
53 | 1UNF_12_209-219 | 2.14 | 1.99 | 2.62 | 50.00 | 80.00 | 90.00 |
54 | 3IEE_8_240-263 | 2.25 | 1.97 | 2.03 | 77.27 | 95.45 | 100.00 |
55 | 3E46_5_128-136 | 2.04 | 1.96 | 5.23 | 25.00 | 62.50 | 62.50 |
56 | 3IEE_9_271-284 | 2.24 | 1.96 | 4.66 | 41.67 | 58.33 | 58.33 |
57 | 3IEE_4_103-135 | 2.02 | 1.99 | 2.14 | 75.00 | 90.63 | 100.00 |
58 | 1HG5_2_39-49 | 2.00 | 1.94 | 1.93 | 90.00 | 100.00 | 100.00 |
59 | 1HZ4_9-10_168-185 | 2.10 | 1.97 | 2.52 | 64.71 | 76.47 | 100.00 |
60 | 1HG5_4_72-88 | 2.09 | 1.98 | 2.69 | 62.50 | 75.00 | 87.50 |
61 | 3IEE_6_185-205 | 2.27 | 2.20 | 2.31 | 58.82 | 88.24 | 100.00 |
62 | 3IEE_7_213-231 | 2.02 | 1.97 | 2.11 | 72.22 | 83.33 | 94.44 |
63 | 2OVJ_5_415-427 | 1.98 | 1.95 | 2.09 | 75.00 | 100.00 | 100.00 |
64 | 1LWB_1_5-11 | 2.02 | 1.95 | 1.96 | 100.00 | 100.00 | 100.00 |
65 | 1HG5_1_20-29 | 2.07 | 2.00 | 2.50 | 66.67 | 88.89 | 100.00 |
66 | 1HZ4_5_87-103 | 2.05 | 1.95 | 2.17 | 68.75 | 93.75 | 100.00 |
67 | 1FLP_3_37-41 | 2.11 | 2.06 | 2.13 | 75.00 | 100.00 | 100.00 |
68 | 1UNF_5_85-100 | 2.05 | 2.01 | 2.96 | 33.33 | 53.33 | 80.00 |
69 | 1UNF_2_47-58 | 2.00 | 1.97 | 2.31 | 63.64 | 100.00 | 100.00 |
70 | 1HG5_7_161-179 | 2.08 | 1.91 | 2.18 | 66.67 | 94.44 | 100.00 |
71 | 2OVJ_6_439-447 | 2.10 | 1.95 | 2.45 | 87.50 | 100.00 | 100.00 |
Average values: | 2.07 | 1.97 | 2.37 | 67.40 | 90.97 | 96.66 |
Results computed with SSETracer.
Index of the data as it appears in Figures 4 and 5. Sorted approximately by longitudinal discrepancy.
PDB ID, the chain ID in the PDB file, the helix ID, and the first and last amino acid index. Sequentially adjacent helices that share same direction are combined.
Averaged amino acid backbone centroid distance from the axis.
Radius for 80% of helix centroids to be within the radial distance from the axis calculated from PDB file.
Radius for 80% of helix centroids to be within the radial distance from the axis detected from the density image using SSETracer.
Sensitivity calculated as A/B using a specified radius threshold, where A is the number of detected AAs and B is the total number of AAs of the helix.
PDB, Protein Data Bank.