TABLE 5.
Identity of enteroviruses detected by RT-PCR in well and river samples
Enterovirus type | No. of positive samples | Sample source | BLAST searcha
|
|
---|---|---|---|---|
% Identity | E-score | |||
Coxsackie B3 | 2 | Well | 97-100 | 0.0 |
Coxsackie B5 | 2 | Well, river | 88-91 | 1e−173, 0.0 |
Coxsackie B4 | 5 | Well | 93-96 | 0.0 |
Coxsackie A3 | 3 | Well, river | 96-100 | 0.0 |
Coxsackie A11 | 1 | Well | 100 | 0.0 |
Coxsackie A16 | 1 | Well | 97 | 0.0 |
Echo 9 | 1 | Well | 86 | 1e−164 |
Echo 18 | 4 | Well | 94-97 | 1e−93, 0.0 |
Echo 19 | 1 | Well | 100 | 1e−166 |
Polio 1 | 2 | Well | 99 | 0.0 |
Polio 3 | 1 | Well | 98 | 0.0 |
Echo 30 | 1 | River | 98 | 0.0 |
Coxsackie B1 | 1 | River | 93 | 0.0 |
The ranges in percent identities and E-scores are reported when two or more samples were positive for the identified enterovirus type.