TABLE 3.
Phylogenetic distributions and functions of clustered non-Methanocaldococcus jannaschii top Blastp hit categories
| ORF intervala (Mmp no.) | Predominant group(s)b | Represented functions |
|---|---|---|
| 0345-0371 | Other Archaea | Conserved hypothetical proteins, carbohydrate metabolism |
| 0483-0536 | Other methanogens and Bacteria | Conserved hypothetical proteins, Fmd, Mo transport, molybdopterin biosynthesis, metal chelatase, probable cation transport |
| 0709-0734 | Bacteria and other methanogens | Divalent cation transport, UvrABC |
| 0753-0762 | Bacteria | Conserved hypothetical proteins |
| 0772-0862 | Other methanogens and Bacteria | Conserved hypothetical proteins, Vhc |
| 0973-0988 | Other methanogens | Cdh |
a
Intervals containing 70% or more top Blastp hits for other methanogens, other Archaea, and Bacteria combined.
b
Groups containing the top Blastp hits for at least 20% of the ORFs in the interval.