Table 1.
Cytokine | Rs-id | Gene | Locus | Position | A1 | A2 | MAF | Info | Beta (SD) | SE (SD) | p Value | HetPVal |
---|---|---|---|---|---|---|---|---|---|---|---|---|
MCP1 | rs12075 | ACKR1 | 1q23.2 | 159175354 | G | A | 0.47 | 1.00 | 0.219 | 0.015 | 1.44 × 10−44 | 8.76 × 10−78 |
SCGFb | rs4656185 | F5 | 1q24.2 | 169476326 | G | A | 0.29 | 1.00 | 0.205 | 0.026 | 1.16 × 10−15 | 7.37 × 10−6 |
IL-18 | rs385076 | NLRC4 | 2p22.3 | 32489851 | T | C | 0.34 | 0.97 | 0.243 | 0.025 | 1.66 × 10−22 | 0.07 |
PDGFbb | rs13412535 | SERPINE2 | 2q36.1 | 224874874 | G | A | 0.19 | 0.87 | 0.335 | 0.021 | 2.46 × 10−55 | 1.86 × 10−10 |
Eotaxin | rs 2228467 | ACKR2 | 3p22.1 | 42906116 | T | C | 0.07 | 1.00 | 0.416 | 0.029 | 2.27 × 10−46 | 0.02 |
MIP1b | rs113010081 | CCRL2 | 3p21.31 | 46457412 | T | C | 0.13 | 0.89 | 0.595 | 0.024 | 3.85 × 10−140 | 0.33 |
IL-17 | rs1530455 | PDIA5 | 3q21.1 | 122854899 | T | C | 0.36 | 0.95 | −0.108 | 0.017 | 4.71 × 10−10 | 0.81 |
TRAIL | esv2656942 | TNFSF10 | 3q26.31 | 172274209 | A | – | 0.04 | 0.98 | −0.431 | 0.041 | 1.74 × 10−25 | 0.74 |
HGF | rs3748034 | HGFAC | 4p16.3 | 3446091 | G | T | 0.12 | 0.97 | 0.150 | 0.023 | 1.79 × 10−10 | 0.50 |
GROa | rs508977 | CXCL1 | 4q13.3 | 74762383 | T | G | 0.24 | 1.00 | 0.380 | 0.028 | 7.56 × 10−42 | 0.03 |
IP10 | rs141053179 | CXCL10 | 4q21.1 | 77589911 | C | G | 0.01 | 0.99 | 1.103 | 0.140 | 2.81 × 10−15 | 0.97 |
IL-18 | rs17229943 | OCLN | 5q13.2 | 68682536 | A | C | 0.08 | 0.84 | 0.312 | 0.046 | 1.62 × 10−11 | 0.98 |
VEGF | rs6921438 | VEGFA | 6p21.1 | 43925607 | G | A | 0.47 | 0.98 | −0.490 | 0.018 | 2.09 × 10−171 | 2.19 × 10−47 |
HGF | rs5745687 | HGF | 7q21.11 | 81359051 | C | T | 0.04 | 1.00 | −0.307 | 0.041 | 2.71 × 10−14 | 0.29 |
VEGF | rs7030781 | VLDLR | 9p24.2 | 2686273 | A | T | 0.42 | 0.98 | −0.137 | 0.017 | 2.57 × 10−15 | 0.01 |
CTACK | rs2070074 | IL11RA | 9p13.3 | 34649442 | A | G | 0.11 | 1.00 | −0.447 | 0.037 | 1.79 × 10−32 | 5.55 × 10−5 |
IL-2ra | rs12722497 | IL2RA | 10p15.1 | 6095928 | C | A | 0.06 | 0.99 | 0.628 | 0.049 | 1.57 × 10−38 | 0.18 |
VEGF | rs10761731 | JMJD1C | 10q21.3 | 65027610 | A | T | 0.36 | 0.99 | 0.119 | 0.017 | 1.01 × 10−11 | 0.54 |
IL-18 | rs71478720 | IL18 | 11q23.1 | 112009605 | C | T | 0.24 | 0.99 | −0.267 | 0.028 | 3.71 × 10−22 | 0.59 |
SCGFb | rs187503377 | STAB2 | 12q23.3 | 104261835 | C | T | 0.02 | 0.93 | 0.965 | 0.097 | 1.34 × 10−23 | 0.07 |
IL-16 | rs4778636 | IL16 | 15q25.1 | 81591639 | G | A | 0.04 | 1.00 | −0.727 | 0.063 | 1.11 × 10−30 | 0.22 |
PDGFbb | rs4965869 | PCSK6 | 15q26.3 | 101990320 | C | T | 0.26 | 1.00 | 0.184 | 0.018 | 5.66 × 10−24 | 7.2 × 10−3 |
MIP1b | rs113877493 | CCL4L1 | 17q12 | 34812273 | C | T | 0.17 | 0.92 | −0.612 | 0.022 | 1.62 × 10−173 | 3.58 × 10−7 |
TRAIL | rs192989810 | MEP1B | 18q12.1 | 29783353 | C | T | 0.01 | 0.96 | 2.221 | 0.078 | 8.40 × 10−175 | 5.92 × 10−3 |
SCGFb | rs116924815 | CLEC11A | 19q13.33 | 51230733 | C | T | 0.03 | 0.97 | 0.608 | 0.074 | 1.74 × 10−16 | 0.03 |
MIF | rs2330634 | MIF | 22q11.23 | 24250795 | C | G | 0.37 | 0.99 | −0.156 | 0.025 | 4.53 × 10−10 | 0.11 |
CTACK | rs201003839 | PPARA | 22q13.31 | 46534944 | A | ACGGGC | 0.27 | 0.99 | 0.190 | 0.027 | 2.42 × 10−12 | 1.36 × 10−3 |
The same locus is occasionally associated with more than one cytokine but only the strongest trait association is reported in the table. Allele 2 is the effect allele. Beta and SE are in SD units. All positions refer to human genome build 37. Info column reports the imputation quality metric calculated by the Impute2 software. HetPVal reports the effect size heterogeneity statistics between the cohorts.