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. 2016 Dec 15;100(1):40–50. doi: 10.1016/j.ajhg.2016.11.007

Table 1.

All Loci Associated with the Concentration of at least One of the Studied Cytokines

Cytokine Rs-id Gene Locus Position A1 A2 MAF Info Beta (SD) SE (SD) p Value HetPVal
MCP1 rs12075 ACKR1 1q23.2 159175354 G A 0.47 1.00 0.219 0.015 1.44 × 10−44 8.76 × 10−78
SCGFb rs4656185 F5 1q24.2 169476326 G A 0.29 1.00 0.205 0.026 1.16 × 10−15 7.37 × 10−6
IL-18 rs385076 NLRC4 2p22.3 32489851 T C 0.34 0.97 0.243 0.025 1.66 × 10−22 0.07
PDGFbb rs13412535 SERPINE2 2q36.1 224874874 G A 0.19 0.87 0.335 0.021 2.46 × 10−55 1.86 × 10−10
Eotaxin rs 2228467 ACKR2 3p22.1 42906116 T C 0.07 1.00 0.416 0.029 2.27 × 10−46 0.02
MIP1b rs113010081 CCRL2 3p21.31 46457412 T C 0.13 0.89 0.595 0.024 3.85 × 10−140 0.33
IL-17 rs1530455 PDIA5 3q21.1 122854899 T C 0.36 0.95 −0.108 0.017 4.71 × 10−10 0.81
TRAIL esv2656942 TNFSF10 3q26.31 172274209 A 0.04 0.98 −0.431 0.041 1.74 × 10−25 0.74
HGF rs3748034 HGFAC 4p16.3 3446091 G T 0.12 0.97 0.150 0.023 1.79 × 10−10 0.50
GROa rs508977 CXCL1 4q13.3 74762383 T G 0.24 1.00 0.380 0.028 7.56 × 10−42 0.03
IP10 rs141053179 CXCL10 4q21.1 77589911 C G 0.01 0.99 1.103 0.140 2.81 × 10−15 0.97
IL-18 rs17229943 OCLN 5q13.2 68682536 A C 0.08 0.84 0.312 0.046 1.62 × 10−11 0.98
VEGF rs6921438 VEGFA 6p21.1 43925607 G A 0.47 0.98 −0.490 0.018 2.09 × 10−171 2.19 × 10−47
HGF rs5745687 HGF 7q21.11 81359051 C T 0.04 1.00 −0.307 0.041 2.71 × 10−14 0.29
VEGF rs7030781 VLDLR 9p24.2 2686273 A T 0.42 0.98 −0.137 0.017 2.57 × 10−15 0.01
CTACK rs2070074 IL11RA 9p13.3 34649442 A G 0.11 1.00 −0.447 0.037 1.79 × 10−32 5.55 × 10−5
IL-2ra rs12722497 IL2RA 10p15.1 6095928 C A 0.06 0.99 0.628 0.049 1.57 × 10−38 0.18
VEGF rs10761731 JMJD1C 10q21.3 65027610 A T 0.36 0.99 0.119 0.017 1.01 × 10−11 0.54
IL-18 rs71478720 IL18 11q23.1 112009605 C T 0.24 0.99 −0.267 0.028 3.71 × 10−22 0.59
SCGFb rs187503377 STAB2 12q23.3 104261835 C T 0.02 0.93 0.965 0.097 1.34 × 10−23 0.07
IL-16 rs4778636 IL16 15q25.1 81591639 G A 0.04 1.00 −0.727 0.063 1.11 × 10−30 0.22
PDGFbb rs4965869 PCSK6 15q26.3 101990320 C T 0.26 1.00 0.184 0.018 5.66 × 10−24 7.2 × 10−3
MIP1b rs113877493 CCL4L1 17q12 34812273 C T 0.17 0.92 −0.612 0.022 1.62 × 10−173 3.58 × 10−7
TRAIL rs192989810 MEP1B 18q12.1 29783353 C T 0.01 0.96 2.221 0.078 8.40 × 10−175 5.92 × 10−3
SCGFb rs116924815 CLEC11A 19q13.33 51230733 C T 0.03 0.97 0.608 0.074 1.74 × 10−16 0.03
MIF rs2330634 MIF 22q11.23 24250795 C G 0.37 0.99 −0.156 0.025 4.53 × 10−10 0.11
CTACK rs201003839 PPARA 22q13.31 46534944 A ACGGGC 0.27 0.99 0.190 0.027 2.42 × 10−12 1.36 × 10−3

The same locus is occasionally associated with more than one cytokine but only the strongest trait association is reported in the table. Allele 2 is the effect allele. Beta and SE are in SD units. All positions refer to human genome build 37. Info column reports the imputation quality metric calculated by the Impute2 software. HetPVal reports the effect size heterogeneity statistics between the cohorts.