Table 3.
Enzymes in seven pathways involved in primary metabolite biosynthesis
| Pathway | EC number | Enzyme | Queries | Number of genes from Panax ginseng |
|---|---|---|---|---|
| Glycolysis pathway ko00010 | EC 3.1.3.11 | Fructose-1,6-bisphosphatase | AT3G54050.1a | 3 |
| EC 2.7.1.11 | 6-Phosphofructokinase | AT2G22480.1a | 4 | |
| EC 4.1.2.13 | Fructose-bisphosphate aldolase | AT2G22480.1 a | 3 | |
| EC 1.2.1.12 | Glyceraldehyde-3-phosphate dehydrogenase | AK243763.1b | 1 | |
| EC 2.7.2.3 | Phosphoglycerate kinase | AT1G56190.1 a | 1 | |
| EC 4.2.1.11 | Phosphopyruvate hydratase | AT2G29560.1 a | 4 | |
| EC 2.7.1.40 | Pyruvate kinase | AT5G52920.1 a | 6 | |
| Alanine, aspartate, and glutamate metabolism ko00250 |
EC 2.6.1.2 | Alanine transaminase | AT1G23310.1 a | 4 |
| EC 2.6.1.44 | Alanine–glyoxylate aminotransferase | AT3G08860.1 a | 4 | |
| EC 2.6.1.1 | Aspartate transaminase | AT1G62960.1 a | 2 | |
| EC 1.2.1.24 | Succinate–semialdehyde dehydrogenase | AT1G79440.1 a | 11 | |
| EC 2.6.1.19 | 4-Aminobutyrate-2-oxoglutarate transaminase | AT3G22200.1 a | 4 | |
| EC 6.3.1.2 | Glutamine synthase | AT5G16570.1 a | 2 | |
| Valine, leucine and isoleucine biosynthesis ko00290 | EC 2.2.1.6 | Acetolactate synthase | AT3G48560.1 a | 3 |
| EC 1.1.1.86 | Ketol-acid reductoisomerase | XM_002525069.1c | 1 | |
| Glycine, serine and threonine metabolism ko00260 | EC 4.3.1.17 | l-Serine ammonia-lyase | AT1G21540.1 a | 6 |
| EC 2.1.2.1 | Serine hydroxymethyl transferase | AT4G13890.1 a | 1 | |
| EC 4.1.2.5 | l-Threonine aldolase | AT3G04520.1 a | 1 | |
| EC 2.7.1.39 | Homoserine kinase | XM_002517652.1c | 2 | |
| EC 4.2.3.1 | Threonine synthase | XM_002521317.1c | 2 | |
| Citrate cycle (TCA cycle) ko00020 |
EC 1.2.4.1 | Pyruvate dehydrogenase | XM_002523354.1c | 2 |
| EC 1.8.1.4 | Dihydrolipoamide dehydrogenase | NM_001247841.1d | 2 | |
| EC 1.1.1.37 | Cytosolic malate dehydrogenase | NM_001247223.1d | 1 | |
| Fructose and mannose metabolism ko00051 |
EC 5.3.1.5 | Xylose isomerase | XM_002532363.1c | 1 |
| EC 1.1.1.14 | Sorbitol dehydrogenase | XM_002510809.1c | 6 | |
| EC 1.1.1.21 | Aldo-keto reductase | XM_002529821.1c | 16 | |
| Arginine and proline metabolism ko00330 |
EC 6.3.4.5 | Argininosuccinate synthase | AT4G24830.1 a | 1 |
| EC 3.5.3.1 | Arginase | AT4G08870.1 a | 1 | |
| EC 2.6.1.13 | Ornithine aminotransferase | AT5G46180 a | 4 | |
| EC 1.5.1.2 | Pyrroline-5-carboxylate reductase | AT5G14800.1 a | 1 |
a
Enzymes derived from Arabidopsis thaliana.
b
Enzymes derived from Glycine max.
c
Enzymes derived from Ricinus communis.
d
Enzymes derived from Solanum lycopersicum.