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. 2016 Jan 9;41(1):60–68. doi: 10.1016/j.jgr.2015.12.012

Table 3.

Enzymes in seven pathways involved in primary metabolite biosynthesis

Pathway EC number Enzyme Queries Number of genes from
Panax ginseng
Glycolysis pathway ko00010 EC 3.1.3.11 Fructose-1,6-bisphosphatase AT3G54050.1a 3
EC 2.7.1.11 6-Phosphofructokinase AT2G22480.1a 4
EC 4.1.2.13 Fructose-bisphosphate aldolase AT2G22480.1 a 3
EC 1.2.1.12 Glyceraldehyde-3-phosphate dehydrogenase AK243763.1b 1
EC 2.7.2.3 Phosphoglycerate kinase AT1G56190.1 a 1
EC 4.2.1.11 Phosphopyruvate hydratase AT2G29560.1 a 4
EC 2.7.1.40 Pyruvate kinase AT5G52920.1 a 6
Alanine, aspartate,
and glutamate metabolism ko00250
EC 2.6.1.2 Alanine transaminase AT1G23310.1 a 4
EC 2.6.1.44 Alanine–glyoxylate aminotransferase AT3G08860.1 a 4
EC 2.6.1.1 Aspartate transaminase AT1G62960.1 a 2
EC 1.2.1.24 Succinate–semialdehyde dehydrogenase AT1G79440.1 a 11
EC 2.6.1.19 4-Aminobutyrate-2-oxoglutarate transaminase AT3G22200.1 a 4
EC 6.3.1.2 Glutamine synthase AT5G16570.1 a 2
Valine, leucine and isoleucine biosynthesis ko00290 EC 2.2.1.6 Acetolactate synthase AT3G48560.1 a 3
EC 1.1.1.86 Ketol-acid reductoisomerase XM_002525069.1c 1
Glycine, serine and threonine metabolism ko00260 EC 4.3.1.17 l-Serine ammonia-lyase AT1G21540.1 a 6
EC 2.1.2.1 Serine hydroxymethyl transferase AT4G13890.1 a 1
EC 4.1.2.5 l-Threonine aldolase AT3G04520.1 a 1
EC 2.7.1.39 Homoserine kinase XM_002517652.1c 2
EC 4.2.3.1 Threonine synthase XM_002521317.1c 2
Citrate cycle (TCA cycle)
ko00020
EC 1.2.4.1 Pyruvate dehydrogenase XM_002523354.1c 2
EC 1.8.1.4 Dihydrolipoamide dehydrogenase NM_001247841.1d 2
EC 1.1.1.37 Cytosolic malate dehydrogenase NM_001247223.1d 1
Fructose and mannose metabolism
ko00051
EC 5.3.1.5 Xylose isomerase XM_002532363.1c 1
EC 1.1.1.14 Sorbitol dehydrogenase XM_002510809.1c 6
EC 1.1.1.21 Aldo-keto reductase XM_002529821.1c 16
Arginine and proline metabolism
ko00330
EC 6.3.4.5 Argininosuccinate synthase AT4G24830.1 a 1
EC 3.5.3.1 Arginase AT4G08870.1 a 1
EC 2.6.1.13 Ornithine aminotransferase AT5G46180 a 4
EC 1.5.1.2 Pyrroline-5-carboxylate reductase AT5G14800.1 a 1
a

Enzymes derived from Arabidopsis thaliana.

b

Enzymes derived from Glycine max.

c

Enzymes derived from Ricinus communis.

d

Enzymes derived from Solanum lycopersicum.