TABLE 1.
Isolates used in this study
Sourcea | No. of isolates | MLVA genogroup | Reference or Source |
---|---|---|---|
Community surveillance | 17 | 12A, 3B, 2C | 30, 31, 33-35 |
Clinical isolates | 126 | 3A, 17B, 18C, 84C1, 4R | 1, 4-6, 14, 18, 22, 32-35 |
Hospital surveillance | 68 | 17A, 7B, 17C, 24C1, 3R | 4, 14, 19, 26, 32-35 |
Hospital outbreak Australia-1 | 2 | C1 | 1, 33 |
Hospital outbreak Australia-2 | 2 | C1 | W. Grubbb |
Hospital outbreak DK-1 | 1 | C1 | 25 |
Hospital outbreak DK-2 | 1 | C1 | 25 |
Hospital outbreak DK-3 | 1 | C1 | 25 |
Hospital outbreak GR-1 | 2 | C1 | 21 |
Hospital outbreak GR-2 | 3 | C1 | 21 |
Hospital outbreak GR-3 | 2 | C1 | 21 |
Hospital outbreak NL-1-1 | 32 | C1 | 32 |
Hospital outbreak NL-1-2 | 7 | C1 | 32 |
Hospital outbreak NL-2-1 | 18 | C1 | 19 |
Hospital outbreak NL-2-2 | 4 | C1 | 19 |
Hospital outbreak NL-3-1 | 4 | R | 26 |
Hospital outbreak NO-1 | 1 | C1 | 15 |
Hospital outbreak TZA-1 | 5 | C1 | B. Blombergb |
Hospital outbreak UK-1 | 4 | C1 | 14 |
Hospital outbreak US-1 | 10 | C1 | 5 |
Hospital outbreak US-2-1 | 1 | C1 | 2 |
Hospital outbreak US-2-2 | 1 | C1 | 2 |
Hospital outbreak US-2-3 | 1 | C1 | 2 |
Hospital outbreak US-2-4 | 1 | C1 | 2 |
Hospital outbreak US-2-5 | 1 | C1 | 2 |
Hospital outbreak US-2-6 | 1 | C1 | 2 |
Hospital outbreak US-2-7 | 1 | C1 | 2 |
Hospital outbreak US-3 | 5 | C1 | S. Slaughterb |
Poultry | 13 | B | 14, 31 |
Pig | 20 | 16A, 3B, 1C | 8, 14, 30 |
Domestic pet | 6 | 3B, 3C | 29 |
Calf | 19 | B | 34 |
Miscellaneous | 12 | 1A, 2B, 4C, 3C1, 2R | 8, 34 |
Total | 392 |
Abbreviations: DK, Denmark; GR, Greece; NL, The Netherlands; NO, Norway; TZA, Tanzania; UK, United Kingdom; US, United States.
Personal communication.