Figure 3.

FDR_s for the described procedures: in (A) we report results relative to EMMAX and in (B) relative to SMT. The dashed black line represents the target FDR_s level of 0.05. Note that EMMAXs with $\rho =1$ (i.e., with no clustering) coincides with EMMAX, and that the FDR_s for this specific case corresponds to the regular FDR. Shapes indicate the procedures: empty triangles for the application of BH to the collection of P-values from EMMAX for all hypotheses followed by clustering of the discoveries; filled triangles for the selective procedure EMMAXs; empty squares for the application of BH to the collection of P-values from SMTs for all hypotheses followed by clustering of the discoveries; filled squares for the selective procedure SMTs; and empty diamonds for the application of BH to the full collection of P-values with no clustering. Colors indicate the parameters for clustering: orange for $\rho =0.3,$ turquoise for $\rho =0.5,$ and blue for $\rho =1.$