Table 1.
Detailed information of three mapping families including the number of progeny, QC filtered reads, SNPs and microsatellites, common markers among families, catalogue loci and common catalogue loci for each family
| Family | Progeny | QC filtered | No. SNPs | No. SSRs | No. common markers (%) | No. catalogue loci | No. common catalogue loci (%) |
|---|---|---|---|---|---|---|---|
| reads (M) | |||||||
| Fam1 | 112 | 4.28 | 2259 | 127 | 476 (21.1%) | 121637 | 96054 (79.0%) |
| Fam2 | 118 | 6.15 | 3241 | 0 | 864 (26.7%) | 153305 | 81083 (52.9%) |
| Fam3 | 118 | 3.79 | 4025 | 64 | 1018 (25.3%) | 133199 | 77187 (57.9%) |