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ChIA-PET2 quality controls. (A) Statistics metrics of linker trimming. (B) Statistics metrics of read alignment. (C) Different types of PETs and their percentages. (D) Intra/Inter-chromosomal interactions percentage with at least four supported PETs. (E) PET count distribution of all candidate intra-chromosomal loops before statistical confidence estimation. (F) PET count distribution of all candidate inter-chromosomal loops before statistical confidence estimation.
