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. 2016 Sep 12;45(1):e4. doi: 10.1093/nar/gkw809

Figure 3.

Figure 3.

Results of the ChIA-PET2 pipeline on real ChIA-PET datasets. (A) Number of CTCF-mediated chromatin loops detected by different methods from bridge-linker ChIA-PET data. CTCF, RAD21 and SMC3 occupancy in the anchors of loops are shown above the histogram. (B) Overlap of CTCF-mediated chromatin loops detected by ChIA-PET2 and the pipeline by Tang et al. (4). (C) Number of RNA POL2-mediated chromatin loops detected by different methods. POL2 occupancy in the anchors of loops is shown above the histogram. (D) Overlap of POL2-mediated chromatin loops detected by ChIA-PET2 and Mango. (E) Reproducibility of ChIA-PET2 and Mango.