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. 2016 Sep 12;45(1):e4. doi: 10.1093/nar/gkw809

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© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 5. — Allele-specific analysis. (A) Signal of CTCF,RAD21, SMC3 ChIP-Seq, DNase-Seq and ChIA-PET peaks near the H19/IGF2 region. (B) Contact matrix generated from all valid ChIA-PET PETs. (C) Maternal contact matrix generated from maternal phased PETs (left panel) and maternal extended phased PETs (right panel). Red arrow indicates the chromatin loop and gray arrow indicates absent or attenuated peak signal. (D) Paternal contact matrix generated from paternal phased PETs (left panel) and paternal extended phased PETs (right panel). The red arrow indicates the chromatin loop and the gray arrow indicates an absent or attenuated peak signal and the blue arrow indicates that both alleles have the peak signal.