Table 1.
Strain collection.
| Strain ID | Host | Sample type | Country | Source | Farm/hospital† | CDI exposure | Date of isolation | ENA accession |
|---|---|---|---|---|---|---|---|---|
| P1 | Porcine | Piglet | Australia | NSW | YNG1 | – | Apr-2012 | ERS1078766 |
| P2 | Porcine | Piglet | Australia | NSW | YNG1 | – | Apr-2012 | ERS1078744 |
| P3 | Porcine | Piglet | Australia | NSW | YNG1 | – | Apr-2012 | ERS1078745 |
| P4 | Porcine | Piglet | Australia | NSW | YNG2 | – | Apr-2012 | ERS1078746 |
| P5 | Porcine | Piglet | Australia | VIC | MAR | – | Jul-2012 | ERS1078769 |
| P6 | Porcine | Piglet | Australia | VIC | MAR | – | Apr-2012 | ERS1078767 |
| P7 | Porcine | Piglet | Australia | VIC | MAR | – | Jul-2012 | ERS1078770 |
| P8 | Porcine | Piglet | Australia | VIC | MAR | – | Jul-2012 | ERS1078771 |
| P9 | Porcine | Piglet | Australia | VIC | MAR | – | Jul-2012 | ERS1078772 |
| P10 | Porcine | Piglet | Australia | VIC | BRM | – | Aug-2012 | ERS1078773 |
| P11 | Porcine | Piglet | Australia | VIC | BRM | – | Aug-2012 | ERS1078774 |
| P12 | Porcine | Piglet | Australia | QLD | MDB | – | Dec-2012 | ERS1078747 |
| P13 | Porcine | Piglet | Australia | QLD | MDB | – | Dec-2012 | ERS1078748 |
| P14 | Porcine | Piglet | Australia | QLD | MDB | – | Dec-2012 | ERS1078749 |
| P15 | Porcine | Piglet | Australia | SA | SHK | – | Jun-2012 | ERS1078758 |
| P16 | Porcine | Piglet | Australia | SA | SHK | – | Jun-2012 | ERS1078759 |
| H1 | Human | Adult-CDI | Australia | VIC | MQP | HA-CDI | Nov-2012 | ERS1078762 |
| H2 | Human | Adult-CDI | Australia | NSW | MQP | CA-CDI | Nov-2012 | ERS1078763 |
| H3 | Human | Adult-CDI | Australia | VIC | RWK | INDET | Dec-2012 | ERS1078764 |
| H4 | Human | Adult-CDI | Australia | NSW | MQP | INDET | Dec-2012 | ERS1078768 |
| H5 | Human | Adult-CDI | Australia | NSW | MQP | CA-CDI | Dec-2012 | ERS1078750 |
| H6 | Human | Adult-CDI | Australia | NSW | SLD | HA-CDI | Mar-2013 | ERS1078754 |
| H7 | Human | Adult-CDI | Australia | NSW | SLD | HA-CDI | Mar-2013 | ERS1078755 |
| H8 | Human | Adult-CDI | Australia | NSW | SLD | HA-CDI | Mar-2013 | ERS1078756 |
| H9 | Human | Adult-CDI | Australia | QLD | TNG | CA-CDI | Nov-2012 | ERS1078760 |
| H10 | Human | Adult-CDI | Australia | QLD | TNG | CA-CDI | Nov-2012 | ERS1078761 |
| H11 | Human | Adult-CDI | Australia | QLD | TNG | CA-CDI | Jan-2013 | ERS1078751 |
| H12 | Human | Adult-CDI | Australia | QLD | TNG | CA-CDI | Jan-2013 | ERS1078752 |
| H13 | Human | Adult-CDI | Australia | SA | ADL | HA-CDI | Dec-2012 | ERS1078765 |
| H14 | Human | Adult-CDI | Australia | SA | ADL | CA-CDI | Mar-2013 | ERS1078753 |
| H15 | Human | Adult-CDI | Australia | SA | ADL | CA-CDI | Apr-2013 | ERS1078757 |
| H16 | Human | Adult-CDI | Australia | VIC | MLB | HA-CDI | Nov-2012 | ERS1078775 |
| H17 | Human | Adult-CDI | Australia | VIC | MLB | HA-CDI* | Nov-2012 | ERS1078776 |
| H18 | Human | Adult-CDI | Australia | VIC | MLB | HA-CDI* | Nov-2012 | ERS1078777 |
| H19 | Human | Adult-CDI | Australia | VIC | MLB | HA-CDI | Nov-2012 | ERS1078778 |
| H20 | Human | Adult-CDI | Australia | VIC | MLB | CA-CDI | Nov-2012 | ERS1078779 |
| H21 | Human | Adult-CDI | Australia | VIC | CLN | CA-CDI | Nov-2012 | ERS1078780 |
| H22 | Human | Adult-CDI | Australia | VIC | CLN | CA-CDI | Nov-2012 | ERS1078781 |
| H23 | Human | Child-CDI | Australia | VIC | CLN | HA-CDI | Nov-2012 | ERS1078782 |
| H24 | Human | Adult-CDI | Australia | VIC | CLN | HA-CDI | Nov-2012 | ERS1078783 |
| Ox1533 | Human | Adult-CDI | UK | OXF | – | HA-CDI | Oct-2008 | ERS139376a |
| Ox593 | Human | Adult-CDI | UK | OXF | – | HA-CDI | Aug-2007 | ERS139417a |
| Ox1475 | Human | Adult-CDI | UK | OXF | – | HA-CDI | Sep-2008 | ERS139420a |
| 43600‡ | Human | Adult-CDI | ECDC | ECDC | – | – | – | SRP044633b |
NSW, New South Wales; VIC, Victoria; SA, South Australia; QLD, Queensland; OXF, Oxford, United Kingdom; CDI, Clostridium difficile infection; CA-CDI, community-associated CDI; HA-CDI, healthcare-associated CDI; INDET, indeterminate.
†
de-identified farms and hospital labs.
ECDC, European Centre for Disease Prevention and Control reference library.
‡
ATCC reference strain.
*
Residential aged care facility (RACF) onset.
ENA, European Nucleotide Archive.
a
Dingle et al. (2013).
b
Knetsch et al. (2012).