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. 2017 Jan 11;7:39550. doi: 10.1038/srep39550

Figure 2. Phylogenetic analysis of GmCYP1 with other known plant CYPs.

Figure 2

Deduced amino acid sequence of GmCYP1 was aligned with other plant CYPs using Clustal omega, and the alignment was imported to MEGA 6.0 to create a phylogenetic tree using Maximum Likelihood method. Numbers indicate bootstrap value in percentage. The tree was exported into Interactive Tree of Life (http://itol.embl.de/) for annotation and manipulation. Accession numbers used for the alignment are: OsCYP2 (AAA57046, O. sativa), OsCYP20-2 (XP_015640756, O. sativa), OsCYP18-2 (XP_015649749, O. sativa), OsCYP25 (XP_015610625, O. sativa), OsCYP21-4 (XP_015647974, O. sativa), AtCYP19-3 (NP_191166, A. thaliana), AtCYP18-3 (NP_195585, A. thaliana), AtCYP18-4 (NP_195213, A. thaliana), AtCYP19-1 (NP_179251, A. thaliana), AtCYP19-2 (NP_179709, A. thaliana), AtCYP19-4 (NP_180557, A. thaliana), AtCYP20-1 (NP_191166, A. thaliana), AtCYP20-2 (NP_196816, A. thaliana), AtCYP20-3 (NP_001154684, A. thaliana), AtCYP28 (NP_198360, A. thaliana), AtCYP37 (NP_188171, A. thaliana), AtCYP38 (NP_186797, A. thaliana), AtCYP40 (NP_565381, A. thaliana), GhCYP1 (ACT63839, G. hirsutum), SlCYP1 (AAA63543, S. lycopersicum), BnCYP (AAA62706, B. napus), ZmCYP (CAA48638, Z. mays), CcCYP1 (ADB04247, C. cajan), ThCYP1 (AAR27291, T. halophila), StCYP (AAD22975, S.tuberosum), PvCYP (CAA52414, P. vulgaris).