Table 1.
Characteristics of the genome assemblies that were used in this study
| Genome features annotation | C. graminicola M1.001 BROAD | C. graminicola M5.001 MAKER | C. sublineolum CgSl1 MAKER |
|---|---|---|---|
| Source of Strain, Reference | Maize, Missouri, 1978 [66] | Maize, Brazil, 1988 [119] | Sorghum, Indiana, 1982 [6] |
| NCBI accession no. of assembly | ACOD01000001 | MRBI01000001 | MQVQ01000001 |
| Reference | [69] | This Manuscript | This Manuscript |
| Strain | M1.001 | M5.001 | CgSl1 |
| Total contig length (Mb) | 51.6 | 48.8 | 64.8 |
| Number of Contigs | 1,151 | 3,280 | 12,943 |
| Number of scaffolds | 653 | n/aa | 548 |
| N50 contig (kb) | 228.96 | 69.85 | 41.05 |
| N50 scaffold (Kb) | 579.19 | n/aa | 339.27 |
| GC-content (%) | 49.12 | 49.8 | 46.45 |
| Protein-coding genes | 12,006 | 15,052 | 13,311 |
| Conserved Genes [71] | 248 | 248 | 247 |
| Mean transcript length (bp) | 1399.1 | 1224.9 | 1389.9 |
| Number of exons | 32967 | 64326 | 35389 |
| Mean number of introns/gene | 1.745 | 3.2126 | 1.65 |
| Mean Intergenic distance (bp) | 2691 | 1599 | 2224.7 |
| Percentage coding | 32.81 | 36.89 | 29.5 |
| Percentage repetitive DNA in genome assembly | 3.12 | 2.83 | 3.14 |
a This assembly was not scaffolded