Table 1.
Specimens and GenBank accession numbers of specimens used in this study
| Species | ID Number | ND2 | Rag1 | PDC | KIF24 |
|---|---|---|---|---|---|
| Anolis carolinensis | n/a | EU747728 | AAWZ 02015549 | AAWZ 02013979 | NW_003338919 |
| Chondrodactylus angulifer | MCZ R-184985 | KY224209 | KY224307 | KY224257 | |
| Chondrodactylus bibronii | CAS 201841 | JN543886 | JN543930 | KY224258 | KY224166 |
| Chondrodactylus fitzsimonsi | MCZ R-185712 | JN393945 | KY224308 | KY224259 | KY224167 |
| Chondrodactylus laevigatus | MCZ R-184819 | KY224211 | KY224310 | KY224260 | KY224168 |
| Chondrodactylus pulitzerae | CAS 193828 | KY224210 | KY224309 | ||
| Chondrodactylus turneri | MCZ R-184410 | KY224249 | KM073525 | KM073612 | KM073800 |
| Coleonyx variegatus | MVZ 161445 | AB114446 | |||
| Coleonyx variegatus | CAS 205334 | EF534777 | EF534817 | ||
| Colopus kochii | CAS 214803 | KY224212 | KY224311 | KY224261 | KY224169 |
| Colopus wahlbergii | NMZB 16974 | JN569158 | JN569191 | JQ945366 | |
| Correlophus ciliatus | AMS R-146595 | JX024438 | EF534778 | EF534818 | KU157544 |
| Elasmodactylus tetensis | PEM R-5540 | KY224213 | KY224312 | KY224262 | KY224170 |
| Elasmodactylus tuberculosus | MCZ:Cryo 3006 | KY224214 | KY224313 | KY224263 | KY224171 |
| Euleptes europaea | no number | JN393941 | EF534806 | EF534848 | KU157420 |
| Gallus gallus | n/a | KT626857 | NM_001031188 | XM_004943303 | NC_006127 |
| Goggia braacki | PEM R-11911 | KM073689 | KM073528 | KM073614 | KM073802 |
| Nephrurus levis | AMS 140561 | GU459544 | GU459746 | KU157421 | |
| Nephrurus levis | SAMA R-19968 | AY369018 | |||
| Oedura marmorata | SAMA R-34209 | AY369015 | |||
| Oedura marmorata | AMS 143861 | EF534779 | EF534819 | KU157428 | |
| Ophidiocephalus taeniatus | SAM R-44653 | AY134601 | HQ426303 | HQ426214 | KU157422 |
| Pachydactylus acuminatus | MCZ R-185739 | KY224215 | KY224314 | KY224264 | KY224172 |
| Pachydactylus affinis | PEM R-17545 | KY224216 | KY224315 | KY224265 | |
| Pachydactylus amoenus | AMB 8670 | JN569163 | |||
| Pachydactylus angolensis | CAS 254887 | KY224217 | KY224316 | ||
| Pachydactylus atorquatus | MCZ R-184811 | KY224218 | KY224317 | KY224266 | |
| Pachydactylus austeni | LSUMZ H1629 | KY224250 | JQ945321 | JQ945389 | KY224173 |
| Pachydactylus barnardi | MCZ R-184749 | KY224219 | KY224318 | KY224267 | |
| Pachydactylus bicolor | NMNW (AMB 7631) | JN543870+ KY224220 | JN543911 | KY224268 | |
| Pachydactylus boehmei | MCZ R-184883 | JN543906 | JN543947 | KY224270 | KY224174 |
| Pachydactylus capensis | MCZ R-184499 | HQ165962 | HQ165992 | HQ165977 | KY224175 |
| Pachydactylus caraculicus | MCZ R-185767 | JN543889 | JN543933 | KY224271 | |
| Pachydactylus carinatus | LSUMZ 57293 | KY224221 | KY224319 | KY224272 | |
| Pachydactylus etultra | MCZ R-184978 | HQ165959 | HQ165989 | HQ165974 | KY224176 |
| Pachydactylus fasciatus | MCZ R-185759 | HQ165949 | HQ165978 | HQ165963 | |
| Pachydactylus formosus | CAS 206715 | KY224222 | KY224320 | KY224273 | |
| Pachydactylus gaiasensis | MCZ R-184169 | JN543891 | KM073533 | KM073615 | KY224177 |
| Pachydactylus geitje | PEM R-11226 | JN543887 | JN543931 | KY224274 | KY224178 |
| Pachydactylus goodi | MCZ R-184783 | KY224223 | KY224321 | KY224275 | KY224179 |
| Pachydactylus griffini | MCZ R-185741 | KY224224 | KY224322 | KY224276 | KY224180 |
| Pachydactylus haackei | CAS 186341 | KY224225 | KY224323 | KY224277 | |
| Pachydactylus kladaroderma | PEM R-1253 | KY224251 | JQ945323 | JQ945391 | |
| Pachydactylus kobosensis | CAS 223904 | KY224226 | KY224324 | KY224278 | KY224181 |
| Pachydactylus labialis | MCZ R-184758 | KY224227 | KY224325 | KY224279 | KY224182 |
| Pachydactylus latirostris | PEM R-16720 | JN569141 | JN569173 | KY224280 | KY224183 |
| Pachydactylus macrolepis | PEM R-17668 | JN569139 | JN569170 | KY224281 | KY224184 |
| Pachydactylus maculatus | CAS 186380 | KY224228 | KY224326 | KY224282 | KY224185 |
| Pachydactylus maraisi | NMNW (JV 1856) | JN543871 | JN543912 | KY224269 | |
| Pachydactylus mariquensis | NMB R10936 | JN569157 | JN569190 | KY224283 | KY224186 |
| Pachydactylus mclachlani | MCZ R-185094 | HQ165950 | HQ165980 | HQ165965 | KY224187 |
| Pachydactylus monicae | CAS 193418 | HQ165952 | HQ165982 | HQ165967 | KY224188 |
| Pachydactylus montanus | MCZ R-184243 | KY224229 | KY224327 | KY224284 | KY224189 |
| Pachydactylus namaquensis | MBUR 01770 | KY224230 | |||
| Pachydactylus namaquensis | MCZ:Cryo 3007 | KY224328 | KY224285 | KY224190 | |
| Pachydactylus oculatus | PEM R-1284 | KY224231 | KY224329 | KY224286 | |
| Pachydactylus oreophilus | MCZ R-185769 | JN543892 | JN543936 | KY224287 | KY224191 |
| Pachydactylus oshaughnessyi | NMZB (DGB 611) | KY224232 | KY224330 | KY224288 | KY224192 |
| Pachydactylus otaviensis | MCZ R-184867 | JN543893 | JN543937 | KY224289 | KY224193 |
| Pachydactylus parascutatus | CAS 214750 | JN543894 | JN543938 | KY224290 | KY224194 |
| Pachydactylus punctatus | PEM R-12461 | KY224233 | KY224331 | KY224291 | |
| Pachydactylus purcelli | PEM R-16895 | HQ165954 | HQ165984 | HQ165969 | |
| Pachydactylus purcelli | MCZ R-184796 | KY224195 | |||
| Pachydactylus rangei | MCZ R-183725 | JN543907 | JN543948 | JQ945392 | |
| Pachydactylus reconditus | MCZ R-184856 | KY224234 | KY224332 | KY224292 | |
| Pachydactylus robertsi | NMNW R6697 | KY224235 | KY224333 | KY224293 | |
| Pachydactylus rugosus | CAS 201905 | KY224252 | JQ945325 | JQ945393 | |
| Pachydactylus sansteynae | CAS 214589 | JN543898 | KY224334 | KY224294 | |
| Pachydactylus scherzi | MCZ R-184938 | KY224236 | KY224335 | KY224295 | |
| Pachydactylus scutatus | MCZ Z37843 | JN543901 | JN543943 | KY224296 | KY224196 |
| Pachydactylus serval | MCZ R-185989 | HQ165956 | HQ165986 | HQ165986 | KY224197 |
| Pachydactylus tigrinus | NMB R10936 | KY224237 | KY224336 | KY224297 | KY224198 |
| Pachydactylus tsodiloensis | MCZ:Cryo 3008 | KY224238 | KY224337 | KY224298 | KY224199 |
| Pachydactylus vansoni | MCZ R-184434 | KY224239 | KY224299 | KY224200 | |
| Pachydactylus vanzyli | NMNW (JV1761) | KY224253 | JQ945326 | JQ945394 | KY224201 |
| Pachydactylus visseri | MCZ:Cryo 3009 | KY224240 | KY224338 | KY224300 | KY224202 |
| Pachydactylus waterbergensis | MCZ R-184751 | KY224241 | KY224339 | KY224301 | |
| Pachydactylus weberi | PEM R-12449 | HQ165960 | HQ165990 | HQ165975 | KY224203 |
| Pachydactylus werneri | MCZ R-184960 | KY224242 | KY224340 | KY224302 | KY224204 |
| Phelsuma inexpectata | JB 56 | JN393939 | JN393983 | JN394016 | |
| Phelsuma rosagularis | n/a | EU423292 | |||
| Phelsuma rosagularis | JB 109 | HQ426306 | HQ426217 | ||
| Phyllopezus pollicaris | MZUSP 92491 | JX041417 | EU293635 | ||
| Phyllopezus pollicaris | CENPAT12084 | JQ827509 | |||
| Phyllopezus pollicaris | JFBM 15822 | HQ426225 | |||
| Pygopus nigriceps | ERP R29509 | AY134604 | |||
| Pygopus nigriceps | SAMA R-23908 | FJ571628 | |||
| Pygopus nigriceps | MVZ 197233 | EF534823 | |||
| Python bivittatus | n/a | AEQU 010344888 | AEQU 01027927 | NW_006537073 | |
| Python regius | n/a | AB177878 | |||
| Rhoptropus afer | MCZ R-183711 | KY224254 | KM073535 | KM073616 | KM073806 |
| Rhoptropus barnardi | CAS 214658 | KY224243 | KY224341 | KY224303 | KY224205 |
| Rhoptropus benguelensis | ANG_WC1834 | KY224246 | KY224346 | ||
| Rhoptropus biporosus | CAS 224030 | KY224244 | KY224342 | KY224304 | KY224206 |
| Rhoptropus boultoni | CAS 214713 | KY224256 | EF534810 | EF534852 | KY224207 |
| Rhoptropus bradfieldi | NMNW (to be accessioned) | KY224245 | KY224343 | KY224305 | |
| Rhoptropus diporus | MCZ R-183737 | KY224255 | KY224344 | KY224306 | KY224208 |
| Rhoptropus montanus | CAS 254867 | KY224247 | KY224345 | ||
| Rhoptropus taeniostictus | CAS 254908 | KY224248 | KY224347 | ||
| Sphaerodactylus nicholsi | CAS 198444 | KU158020 | EF534786 | EF534826 | KU157415 |
| Sphaerodactylus roosevelti | CAS 198428 | JN393943 | EF534785 | EF534825 | |
| Sphaerodactylus torrei | JB 34 | JX440519 | EF534788 | EF534829 | KU157416 |
| Teratoscincus microlepis | JFBM 15 | KU157417 | |||
| Teratoscincus microlepis | TG 00074 | JX041451 | EF534800 | EF534842 | |
| Teratoscincus roborowskii | CAS 171203 | AF114252 | |||
| Teratoscincus roborowskii | TG 00070 | EF534799 | EF534841 | ||
| Teratoscincus roborowskii | JFBM 14 | KU157418 | |||
| Teratoscincus scincus | CAS 228808 | KU157419 | |||
| Teratoscincus scincus | JFBM 14252 | JX041454 | EF534801 | EF534843 | |
| Trachylepis varia | MCZ-R 184873 | GU931671 | |||
| Trachylepis varia | TNHC 68769 | GU931603 | GU931534 | ||
| Trachylepis varia | ZFMK 68413 | KC345241 | |||
| Woodworthia maculata | RAH 292 | GU459852 | GU459449 | GU459651 | |
| Woodworthia maculata | RAH 92 | KU157432 |
Specimen ID codes are as follows: AMB (Aaron M. Bauer field collection); AMS (Australian Museum, Sydney); ANG_WC (Werner Conradie field collection); CAS (California Acedemy of Sciences); CENPAT (Centro Nacional Patagónico, Puerto Madryn); DGB (Donald G. Broadley field collection); ERP (Eric R. Pianka field collection); JB (Jon Boone tissue collection); JFBM (James Ford Bell Museum of Natural History, University of Minnesota); JV (Jens Vindum field collection); LSUMZ (Louisiana State University Museum of Zoology); MBUR (Marius Burger field collection); MCZ (Museum of Comparative Zoology, Harvard University); MVZ (Museum of Vertebrate Zoology, University of California); MZUSP (Museum of Zoology, University of Sao Paulo); NMB (National Museum, Bloemfontein); NMNW (National Museum of Namibia, Windhoek); NMZB (National Museum of Zimbabwe, Bulawayo); PEM (Port Elizabeth Museum); RAH (Rod A. Hitchmough tissue collection); SAM/SAMA (South Australian Museum); TG (Tony Gamble tissue collection); TNHC (Texas Natural History Collection); ZFMK (Zoologisches Forschungsmuseum Alexander Koenig)