Table 1.
Details of strains included in this study.
| Genus and species | Culture accession number(s)1 | Previous name | Origin | GenBank accession numbers2 |
|||
|---|---|---|---|---|---|---|---|
| ITS | LSU | rpb2 | tub2 | ||||
| Achaetomium | |||||||
| Ach. globosum | CBS 332.67 T | Rhizosphere, Lucknow, India | KX976570 | KX976695 | KX976793 | KX976911 | |
| Ach. luteum | CBS 618.68 | Cucurbita rhizosphere, Delhi, India | KX976571 | KX976696 | KX976794 | KX976912 | |
| CBS 544.83 | Rosa stem, Lahore, Pakistan | KX976572 | KX976697 | KX976795 | KX976913 | ||
| Ach. macrosporum | CBS 152.97 T | Leaf litter, Uttar Pradesh, India | KX976573 | KX976698 | KX976796 | KX976914 | |
| CBS 532.94 | Mangrove mud, Japan | KX976574 | KX976699 | KX976797 | KX976915 | ||
| Ach. strumarium | CBS 333.67 T | Soil, Lucknow, India | AY681204 | AY681170 | KC503254 | AY681238 | |
| Amesia gen. nov. | |||||||
| Am. atrobrunnea | CBS 379.66*T | Ch. atrobrunneum | Mouldy mattress, Solomon Islands | JX280771 | JX280666 | KX976798 | KX976916 |
| CBS 250.75 | Air, Uttar Pradesh, India | KX976575 | KX976700 | KX976799 | KX976917 | ||
| Am. cymbiformis | CBS 175.84 | Ch. cymbiforme | Tent rope, Solomon Islands | KX976576 | KX976701 | KX976800 | KX976918 |
| CBS 176.84* | Case liner, Georgia, USA | KX976577 | KX976702 | KX976801 | KX976919 | ||
| Am. nigricolor | CBS 600.66 T | Ch. nigricolor | Vegetable detritus, India | KX976578 | KX976703 | KX976802 | KX976920 |
| CBS 291.83* | Paper, India | KX976579 | KX976704 | KX976803 | KX976921 | ||
| Am. gelasinospora | CBS 673.80 T | Ch. gelasinosporum | Soil, Qus, Egypt | KX976580 | KX976705 | KX976804 | KX976922 |
| CBS 643.83 | Sandy soil, Gawa, Nigeria | KX976581 | KX976706 | KX976805 | KX976923 | ||
| Arcopilus | |||||||
| Ar. aureus | CBS 153.52 | Ch. aureum | Virginia, USA | KX976582 | KX976707 | KX976806 | KX976924 |
| CBS 538.73 | Dung of hyrax, East Africa | KX976583 | KX976708 | KX976807 | KX976925 | ||
| Ar. cupreus | CBS 560.80 | Ch. cupreum | Dung of moose, Mietta Hot Springs, Canada | KX976584 | KX976709 | KX976808 | KX976926 |
| Ar. fusiformis | CBS 484.85 | Ch. fusiforme | Dung of rodent, Newberry Mts., Nevada, USA | KX976585 | KX976710 | KX976809 | KX976927 |
| CBS 485.85 | Wood chip, Hiltin Falls, Ontario, Canada | KX976586 | KX976711 | KX976810 | KX976928 | ||
| Ar. flavigenus | CBS 337.67 T | Ch. flavigenum | Soil, Johannesburg, South Africa | KX976587 | KX976712 | KX976811 | KX976929 |
| Ar. turgidopilosus | CBS 169.52*T | Ch. turgidopilosum | Top of storage tent, USA | KX976588 | KX976713 | KX976812 | KX976930 |
| Botryotrichum | |||||||
| B. atrogriseum | CBS 130.28 T | Dung of rabbit, The Netherlands | KX976589 | KX976714 | KX976813 | KX976931 | |
| CBS 604.69 | Corn field soil, Waterloo, Ontario, Canada | KX976590 | KX976715 | KX976814 | KX976932 | ||
| B. murorum | CBS 163.52 | Ch. murorum | Great Smoky Mts., Tennessee, USA | KX976591 | KX976716 | KX976815 | KX976933 |
| CBS 173.68 | Liquor cerebrospinalis of Homo sapiens, Netherlands | KX976592 | KX976717 | KX976816 | KX976934 | ||
| DTO 324-G9*; DTO 324-H9 | Air, China | KX976593 | KX976718 | KX976817 | KX976935 | ||
| DTO 333-E6*(= IBT 42175) | Ceiling tile, Denmark | KX976594 | KX976719 | KX976818 | KX976936 | ||
| B. peruvianum | CBS 460.90 | Dung of herbivore, Massanella, Spain | KX976623 | KX976720 | KX976819 | KX976937 | |
| CBS 421.93 | Air, La Habana, Cuba | KX976596 | KX976721 | KX976820 | KX976938 | ||
| B. piluliferum | CBS 654.79 | Pastry, Enschede, Netherlands | KX976597 | KX976722 | KX976821 | KX976939 | |
| CBS 105.14 | Unknown | KX976598 | KX976723 | KX976822 | KX976940 | ||
| DTO 194-F7 | Plaster wall, The Netherlands | KX976599 | KX976724 | KX976823 | KX976941 | ||
| DTO 254-B8*; DTO 254-B9 | Wall in villa, Utrecht, The Netherlands | KX976600 | KX976725 | KX976824 | KX976942 | ||
| B. spirotrichum | CBS 211.55 T | Emilmuelleria spirotricha | Dung of deer, California, USA | KX976601 | KX976726 | KX976825 | KX976943 |
| CBS 828.71 | Dung of donkey, Algeria | KX976602 | KX976727 | KX976826 | KX976944 | ||
| Chaetomium sensu stricto** | |||||||
| C. cervicicola | DTO 318-G6 | Dust, Mexico | KX976603 | KX976728 | KX976827 | KX976945 | |
| C. coarctatum | DTO 324-H2* | Air, China | KX976604 | KX976729 | KX976828 | KX976946 | |
| C. cochliodes | DTO 013-C2 | Air, Maastricht, The Netherlands | KX976605 | KX976947 | |||
| DTO 089-E2 | Air, Eindhoven, The Netherlands | KX976606 | KX976948 | ||||
| DTO 319-B5; DTO 319-B6 | Dust, South Africa | KX976607 | KX976730 | KX976829 | KX976949 | ||
| DTO 318-I1*; DTO 318-H2; DTO 318-H4;DTO 318-H5; DTO 318-H7; DTO 318-H8; DTO 318-I3; DTO 318-I5; DTO 318-I6;DTO 318-I8; DTO 318-I9; DTO 319-A1;DTO 319-B5; DTO 319-B6; DTO 325-F7 | Dust, USA | KX976608 | KX976950 | ||||
| C. elatum | DTO 318-H9*; DTO 318-G7 | Dust, USA | KX976609 | KX976731 | KX976830 | KX976951 | |
| DTO 319-B3* | Dust, Australia | KX976610 | KX976732 | KX976831 | KX976952 | ||
| DTO 333-E5 | Dust, Denmark | KX976611 | KX976953 | ||||
| CBS 142034 neoT (= DTO 333-E9 = IBT 42179) | Cardboard, Denmark | KX976612 | KX976733 | KX976832 | KX976954 | ||
| DTO 333-F8 (= IBT 42329) | Gypsum, Denmark | KX976613 | KX976955 | ||||
| C. globosum | DTO 134-D9; DTO 134-E1; DTO 134-E2; DTO 134-E3; DTO 134-E4; DTO 134-E5 | Air, Algeria | KX976614 | KX976956 | |||
| DTO 318-G3; DTO 318-G4; DTO 318-G5 | Dust, Canada | KX976615 | KX976957 | ||||
| DTO 324-D7; DTO 324-G8; DTO 324-H1; DTO 324-H4; DTO 324-H5; DTO 324-I1; DTO 324-I2; DTO 324-I3; DTO 324-I4; DTO 324-I5; DTO 324-I6; DTO 324-I7; DTO 324-I8; DTO 324-I9; DTO 325-A1; DTO 325-A2; DTO 325-A3; DTO 325-A4 | Air, China | KX976616 | KX976958 | ||||
| CBS 666.82* | Chili powder, China | KX976617 | KX976734 | KX976833 | KX976959 | ||
| DTO 333-D7 (= IBT 42328); DTO 333-D8 (= IBT 42326); DTO 333-D9 (= IBT 42327); DTO 333-F4 (= IBT 42297); DTO 333-F5 (= IBT 42299); DTO 333-F6 (= IBT 42301); DTO 333-F7 (= IBT 42325); DTO 333-F9 | Gypsum, Denmark | KX976618 | KX976960 | ||||
| DTO 333-E1 (= IBT 41766); DTO 333-E8 (= IBT 42177) | Plywood, Denmark | KX976619 | KX976961 | ||||
| DTO 333-E3*(= IBT 41800) | Linoleum, Denmark | KX976620 | KX976735 | KX976834 | KX976962 | ||
| DTO 333-E4 (= IBT 41801) | Carpet, Denmark | KX976621 | KX976963 | ||||
| DTO 333-E7 (= IBT 42176) | Oriented strand board, Denmark | KX976622 | KX976964 | ||||
| CBS 112386; DTO 340-I2 | Indoor environment, Germany | KX976623 | KX976965 | ||||
| DTO 012-F3 | Air, Hamburg, Germany | KX976624 | KX976966 | ||||
| DTO 012-D2 | Air, Koln, Germany | KX976625 | KX976967 | ||||
| DTO 237-D4 | Air, Indonesia | KX976626 | KX976968 | ||||
| DTO 319-B2*; DTO 319-A3; DTO 319-A4; DTO 319-A5; DTO 319-A6; DTO 319-A7; DTO 319-A8; DTO 319-A9; DTO 319-B1 | Dust, Mexico | KX976627 | KX976736 | KX976835 | KX976969 | ||
| DTO 085-E8; DTO 085-F5; DTO 085-F6 | Air, Baarn, The Netherlands | KX976628 | KX976970 | ||||
| DTO 122-H9 | Air, Gorinchem, The Netherlands | KX976629 | KX976971 | ||||
| DTO 123-D4 | Air, Zutphen, The Netherlands | KX976630 | KX976972 | ||||
| DTO 264-C1 | Wall in house, Wassenaar, The Netherlands | KX976631 | KX976973 | ||||
| DTO 272-I1 | Wall, Utrecht, The Netherlands | KX976632 | KX976974 | ||||
| DTO 086-D6 | Archive material, Gorinchem, The Netherlands | KX976633 | KX976975 | ||||
| DTO 126-B6 | Indoor environment, Den Haag, The Netherlands | KX976634 | KX976976 | ||||
| DTO 011-F7; DTO 012-F2 | Wall paper, Loosdrecht, The Netherlands | KX976635 | KX976977 | ||||
| DTO 319-B4 | Dust, South Africa | KX976636 | KX976978 | ||||
| DTO 319-C3 | Dust, Thailand | KX976637 | KX976979 | ||||
| DTO 319-C9 | Dust, Uruguay | KX976638 | KX976980 | ||||
| DTO 318-H3; DTO 318-H6; DTO 318-I4; DTO 319-C5; DTO 319-C6 | Dust, USA | KX976639 | KX976981 | ||||
| CBS 148.51 | Stored cotton, District of Columbia, USA | GU563374 | GU563363 | KF001801 | JF772459 | ||
| C. tectifimeti | CBS 142032 T (= DTO 318-G8)* | Dust, USA | KX976640 | KX976737 | KX976836 | KX976982 | |
| Collariella | |||||||
| Col. bostrychodes | CBS 163.73 | Ch. bostrychodes | Dung of antelope, East Africa | KX976641 | KX976738 | KX976837 | KX976983 |
| CBS 586.83 | Soil, Germany | KX976642 | KX976739 | KX976838 | KX976984 | ||
| DTO 319-C4 | Dust, Indonesia | KX976643 | KX976985 | ||||
| DTO 324-H3; DTO 324-H6* | Air, China | KX976644 | KX976740 | KX976839 | KX976986 | ||
| CBS 121706 | Commercial honey, Spain | KX976645 | KX976987 | ||||
| Col. causiiformis | CBS 792.83*T | Ch. causiiform | Sweatband of helmet liner, Solomon Islands | KX976646 | KX976741 | KX976840 | KX976988 |
| Col. carteri | CBS 128.85*T | Air, British Columbia, Canada | KX976647 | KX976742 | KX976841 | KX976989 | |
| Col. gracilis | CBS 146.60 T | Ch. gracile | Soil, Tsu, Mie, Japan | KX976648 | KX976743 | KX976842 | KX976990 |
| CBS 249.75* | Air, Uttar Pradesh, India | KX976649 | KX976744 | KX976843 | KX976991 | ||
| Col. quadrangulata | CBS 142.58 | Ch. quadrangulatum | Soil, French Polynesia | KX976650 | KX976745 | KX976844 | KX976992 |
| CBS 152.59 | Dung of rabbit, Derbyshire, Chatsworth Park, England | KX976651 | KX976746 | KX976845 | KX976993 | ||
| Col. robusta | CBS 551.83 T | Ch. robustum | Litter, Portland Parish, Jamaica | KX976652 | KX976747 | KX976846 | KX976994 |
| CBS 508.84 | Woodlot soil, Ocho Rios, Jamaica | KX976653 | KX976748 | KX976847 | KX976995 | ||
| Col. virescens | CBS 148.68 T | Ch. virescens | Agricultural soil, Lahore, Pakistan | KX976654 | KX976749 | KX976848 | KX976996 |
| CBS 547.75 | Wheat straw compost, Ludhiana, Punjab | KX976655 | KX976750 | KX976849 | KX976997 | ||
| Corynascella | |||||||
| Cor. humicola | CBS 337.72 T | Soil, Piedmont, North Carolina, USA | KX976656 | KX976751 | KX976850 | KX976998 | |
| CBS 379.74 | Soil, Piedmont, North Carolina, USA | KX976657 | KX976752 | KX976851 | KX976999 | ||
| Dichotomopilus | |||||||
| D. dolichotrichus | CBS 162.48 T | Ch. dolichotrichum | Great Smoky Mts., USA | HM449049 | HM449063 | KX976852 | JF772462 |
| CGMCC 3.14189 | Discarded cloth, Longjing, Jilin Province, China | HM449048 | HM449062 | KX976853 | JF772455 | ||
| D. erectus | CBS 140.56 T | Ch. erectum | Petroselinum sativum, USA | HM449044 | HM449058 | KX976854 | JF772458 |
| CGMCC 3.12900 | Soil, Anqiu, Shandong Province, China | KC109760 | KC109760 | KX976855 | KC109778 | ||
| D. funicola | CBS 159.52 eT | Ch. funicola | Germany | GU563369 | GU563354 | KX976856 | JF772461 |
| CBS 136.38 | Unknown | HM449046 | HM449060 | KX976857 | JF772457 | ||
| DTO 333-F1*; DTO 333-F2* | Dust, outdoors, Denmark | KX976658 | KX976753 | KX976858 | KX977000 | ||
| DTO 318-I2 | Dust, USA | KX976659 | KX977001 | ||||
| D. fusus | CBS 372.66 T | Ch. fusum | Leaf litter, Bataan, Costa Rica | KX976660 | KX976754 | KX976859 | KX977002 |
| CBS 114.83 | Tectona grandis or calyx, Jamaica | KX976661 | KX976755 | KX976860 | KX977003 | ||
| D. indicus | CGMCC 3.14184 eT | Ch. indicum | Rhizosphere of Panax notoginseng, Yunnan, China | GU563367 | GU563360 | KX976861 | JF772453 |
| CGMCC 3.14182 | Rhizosphere of Panax notoginseng, Yunnan, China | GU563366 | GU563358 | KX976862 | JF772451 | ||
| DTO 333-E2* | Feather, Denmark | KX976662 | KX976756 | KX976863 | KX977004 | ||
| DTO 333-F3* | Dust, outdoors, Denmark | KX976663 | KX976757 | KX976864 | KX977005 | ||
| DTO 319-B8* | Dust, South Africa | KX976664 | KX976758 | KX976865 | KX977006 | ||
| D. pratensis | CBS 133396 T (= CGMCC 3.14181) | Ch. pratense | Soil, Huangnan, Qinghai Province | GU563372 | GU563357 | KX976866 | JF772450 |
| CBS 804.83 | Wood of celar, Switzerland | KX976665 | KX976759 | KX976867 | KX977007 | ||
| CBS 860.68* | Ch. indicum | Air, Germany | KX976666 | KX976760 | KX976868 | KX977008 | |
| D. pseudoerectus | CBS 252.75*T | Air, Uttar Pradesh, India | KX976667 | KX976761 | KX976869 | KX977009 | |
| D. pseudofunicola | CBS 142033 T (= DTO 318-I7)* | Dust, USA | KX976668 | KX976762 | KX976870 | KX977010 | |
| D. ramosissimus | CGMCC 3.14183 T | Ch. ramosissimum | Rhizosphere of Panax Notoginseng, Yunnan, China | GU563371 | GU563361 | KX976871 | JF772452 |
| CGMCC 3.12930 | Soil, Huanggang, Hubei Province | HM449045 | HM449059 | KX976872 | JF772449 | ||
| D. reflexus | CBS 157.49 T | Ch. reflexum | Germinating seed, Toledo, Ohio, USA | HM449051 | HM449055 | KX976873 | JF772460 |
| CBS 141.56 | Seed, Edmonton, Alberta, Canada | KX976669 | KX976763 | KX976874 | KX977011 | ||
| D. subfunicola | CGMCC 3.12892 T | Ch. subfunicola | Soil, Shihezi, Xinjiang Autonomous Region | JX867125 | JX867125 | KX976875 | JX867122 |
| CGMCC 3. 9466 | Rhizosphere of Panax Notoginseng, Yunnan, China | GU563368 | GU563353 | KX976876 | JF772446 | ||
| CBS 812.73* | Pistol belt, New Guinea | KX976670 | KX976764 | KX976877 | KX977012 | ||
| CBS 794.83* | Paper, Switzerland | KX976671 | KX976765 | KX976878 | KX977013 | ||
| D. variostiolatus | CBS 179.84*T | Ch. variostiolatum | Tarpaulin, New Guinea | KX976672 | KX976766 | KX976879 | KX977014 |
| DTO 319-A2* | Dust, USA | KX976673 | KX976767 | KX976880 | KX977015 | ||
| DTO 319-B9*; DTO 319-C1 | Dust, Thailand | KX976674 | KX976768 | KX976881 | KX977016 | ||
| Humicola | |||||||
| H. fuscoatra | CBS 118.14 T | Soil, Norway | KX976675 | KX976769 | KX976882 | KX977017 | |
| H. olivacea | CBS 142031 T (= DTO 319-C7)* | Dust, USA | KX976676 | KX976770 | KX976883 | KX977018 | |
| Humicola sp. | DTO 318-G9; DTO 318-H1 | Dust, Mexico | KX976677 | KX976771 | KX976884 | KX977019 | |
| DTO 319-B7* | Dust, South Africa | KX976678 | KX976772 | KX976885 | KX977020 | ||
| Melanocarpus | |||||||
| Me. albomyces | CBS 638.94 T | Chicken nest straw, Nevada, USA | KX976679 | KX976773 | KX976886 | KX977021 | |
| CBS 747.70 | Coal pit refuse, UK | KX976680 | KX976774 | KX976887 | KX977022 | ||
| Me. tardus | CBS 541.76*T | Cotton jacket, Switzerland | KX976681 | KX976775 | KX976888 | KX977023 | |
| Myceliophthora | |||||||
| My. fergusii | CBS 406.69 T | Mushroom compost, Pennsylvania, USA | HQ871794 | KX976776 | HQ871815 | KX977024 | |
| My. heterothallica | CBS 202.75 | Garden soil, Giessen, Germany | HQ871771 | KM655354 | HQ871798 | KX977025 | |
| My. lutea | CBS 145.77 neoT | Hay, Newmarket, UK | HQ871775 | KM655351 | HQ871816 | KX977026 | |
| My. sepedonium | CBS 111.69 T | Soil, Allahabad, India | HQ871751 | KX976777 | HQ871827 | KX977027 | |
| My. thermophila | CBS 669.85 | Cellulase, USA | HQ871767 | KX976778 | HQ871806 | KX977028 | |
| CBS 381.97 | Homo sapiens, Unknown | HQ871766 | KX976779 | HQ871805 | KX977029 | ||
| Ovatospora | |||||||
| O. brasiliensis | CBS 130174 | Ch. brasiliense | Soil, Colombia | KX976682 | KX976780 | KX976895 | KX977030 |
| CBS 140.50* | Moist jute cloth, Calcutta, India | KX976683 | KX976781 | KX976896 | KX977031 | ||
| O. medusarum | CBS 148.67 T | Ch. medusarum | Soil, Zaire | KX976684 | KX976782 | KX976897 | KX977032 |
| O. mollicella | CBS 583.83 T | Ch. mollicellum | Dung of spotted skunk, Washington, USA | KX976685 | KX976783 | KX976898 | KX977033 |
| O. pseudomollicella | CBS 251.75*T | Air, Uttar Pradesh, India | KX976686 | KX976784 | KX976899 | KX977034 | |
| O. senegalensis | CBS 728.84 T | Ch. senegalense | Plant remains, Senegal | KX976687 | KX976785 | KX976900 | KX977035 |
| CBS 798.83 | Dung of gazelle, Israel | KX976688 | KX976786 | KX976901 | KX977036 | ||
| O. unipora | CBS 109.83 T | Ch. uniporum | Soil, Egypt | KX976689 | KX976787 | KX976902 | KX977037 |
| Subramaniula | |||||||
| S. anamorphosa | CBS 137114 T | Ch. anamorphosum | Peritonitis of Homo sapiens, Kuwait | KP862598 | KP970641 | KP900667 | KP900704 |
| S. asteroides | CBS 123294 T | Keratitis of Homo sapiens, USA | HQ906667 | JX280731 | KP900666 | KP900703 | |
| CBS 128466 | Corneal ulcer of Homo sapiens, USA | JX280843 | JX280732 | KP900656 | KP900695 | ||
| S. cristata | CBS 156.52 T | Ch. cristatum | Dung of rabbit, Virginia, USA | KX976690 | KX976788 | KX976903 | KX977038 |
| DTO 324-H8*; DTO 324-H7 | Air, China | KX976691 | KX976789 | KX976904 | KX977039 | ||
| S. cuniculorum | CBS 800.83 | Ch. cuniculorum | Soil, Spain | KX976692 | KX976790 | KX976905 | KX977040 |
| S. fusispora | CBS 199.84 | Ch. fusisporum | Dung of marmot, Alberta, Canada | KP862601 | KP970645 | KP900653 | KP900707 |
| S. flavipila | CBS 446.66 T | Ch. irregulare | Dead leaves, Bulgaria | KP862600 | KP970647 | KP900669 | KP900706 |
| CBS 227.82 | Dung, Spain | KP862599 | KP970646 | KP900668 | KP900705 | ||
| S. obscura | CBS 132916 T | Tinea pedis of Homo sapiens, Kuwait | KP862595 | KP970653 | KP900662 | KP900700 | |
| S. thielavioides | CBS 122.78 T | Dung of nilgai, Delhi Zoo, India | KP862597 | KP970654 | KP900670 | KP900708 | |
| CBS 560.84 | Dung of herbivore, Delhi, India | KP862596 | KP970655 | KP900672 | KP900710 | ||
| Thielavia | |||||||
| T. appendiculata | CBS 731.68 | Dung of rabbit, Wales | KM655330 | KM655369 | KX976906 | KX977041 | |
| T. fragilis | CBS 456.73 T | Rhizosphere of Pennisetum typhoideum in garden soil, Tamil Nadu, India | KX976693 | KX976791 | KX976907 | KX977042 | |
| T. hyrcaniae | CBS 353.62 T | Sand dune soil, Iran | KM655329 | KM655368 | KX976908 | KX977043 | |
| T. kuwaitensis | CBS 945.72 T | Desert soil, Kuwait | KM655332 | KM655371 | KX976909 | KX977044 | |
| T. terricola | CBS 165.88 | Barren soil, North Carolina, USA | KX976694 | KX976792 | KX976910 | KX977045 | |
| Microascus trigonosporus | CBS 218.31 T | USA | LM652443 | HG380436 | DQ470908 | LM652655 | |
T, eT and neoT denote ex-type, ex-epitype and ex-neotype cultures respectively.
1
The isolates from the indoor environments are highlighted in bold.
2
The newly generated sequences in this study are shown in bold; where multiple culture numbers are listed in the row only the sequences from the first culture was deposited in GenBank.
∗
The isolates that were analysed for their metabolite production.
∗∗
Here only the sequences of the representatives of indoor Chaetomium sensu stricto species are provided. For the information of other Chaetomium species please see in our previous study (Wang et al. 2016).