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. 2004 Sep 17;4:33. doi: 10.1186/1471-2148-4-33

Figure 1.

Figure 1

a) Correlation between average αAB and average observed α. b) Correlation between average αML and average observed α. αAB is Alignment-Based rate factor solely depending on the given alignment. αML is rate factor estimated by maximum likelihood method, which requires an alignment and evolutionary tree inferred from the alignment. The protein family used here is the PDZ domain.