TABLE 2.
Sequence category and subcategory | GSS sequences
|
EST
|
||
---|---|---|---|---|
No. | % | No. | % | |
Total | 1,493 | 100 | 924 | 100 |
Redundant | 1,094 | 73.2 | 305 | 33.0 |
Repeat gene family members | 855 | 57.2 | 145 | 15.6 |
Less than 200 bp or repeat sequences | 225 | 15.0 | 109 | 11.7 |
No ORF | 14 | 0.93 | 51 | 5.5 |
Nonredundant | 399 | 26.8 | 619 | 66.0 |
Database homology to trypanosomes only | 58 | 3.8 | 48 | 5.1 |
Database homology to trypanosomes and other organisms | 81 | 5.4 | 223 | 24.1 |
No database homologya | 260 | 17.4 | 348 | 37.6 |
Cutoff for homology was set at an expect value of ≤10−5.