Table 1. Transcripts with experimentally-determined 5'-ends and selected features.
| b-No. | Gene | KSG effect [KEV] |
5'-UTR - KSG [nt] |
5'-UTR + KSG [nt] |
Distance to AUG [bp] |
SD-motif | Sequence at SD site1 |
|---|---|---|---|---|---|---|---|
| b1809 | yoaB | 0,25 | 31 | 31 | 5 | yes | TGAGGACA |
| b1238 | tdk | 0,34 | 34 | 34 | 3 | no | GCCTGTGG |
| b3180 | yhbY | 0,36 | 31 | 31 | 7 | yes | TAAGCAAA |
| b1779 | gapA | 0,37 | 36 | 36 | 5 | no | GCTGGTGG |
| b2765 | sscR | 0,37 | 24 | 24 | 4 | no | TGTAGAGA |
| b1824 | yobF | 0,39 | 27 | 27 | 5 | no | TACAGTTC |
| b2412 | zipA | 0,40 | 47 | 47 | 6 | no | CAACAGAG |
| b3357 | crp | 0,45 | 166 | 166 | 7 | yes | AGAGGATA |
| b3357 | crp | 68 | 68 | ||||
| b0762 | ybhT | 0,47 | 193 | 193 | 5 | yes | TCTGGAGT |
| b0762 | ybhT | 22 | 22 | ||||
| b0947 | ycbX | 0,48 | 25 | 25 | 5 | yes | TGAGGACC |
| b2682 | ygaZ | 2,38 | 48 | 48 | 6 | yes | TAAGCGTA |
| b0882 | clpA | 2,56 | 53 | 53 | 5 | yes | GGGGGAGG |
| b0882 | clpA | 173 | 173 | ||||
| b4052 | dnaB | 2,61 | 31 | 28 | 6 | no | TAACTCCA |
| b0081 | mraZ | 2,69 | 45 | 45 | 5 | yes | GGGTGAGG |
| b3958 | argC | 2,74 | 118 | 118 | 4 | no | TGAATAGC |
| b0850 | ybjC | 3,07 | 21 | 21 | 7 | yes | TGCAGAGG |
| b2208 | napF | 3,61 | 77 | 77 | 6 | yes | GATGGAAG |
| b3321 | rpsJ | 3,79 | 20 | 20 | 5 | no | GAGCTCTG |
| b3179 | rrmJ | 5,21 | 67 | 67 | 6 | no | CATGGGAA |
| SD consensus | TAAGGAGG |
1the nucleotides that match the SD consensus are shown in bold