Table 4.
Breast cancer pathways from GSE2990 (p < 0.01).
| # | Name | ES | NES | p value |
|---|---|---|---|---|
| 1 | REACTOME_DEFENSINS | −0.767 | −1.599 | 0.008230452 |
| 2 | REACTOME_ORGANIC_CATION_ANION_ZWITTERION_TRANSPORT | 0.771 | 1.668 | 0.004016064 |
| 3 | REACTOME_G0_AND_EARLY_G1 | −0.771 | −1.601 | 0.008213553 |
| 4 | REACTOME_CELL_SURFACE_INTERACTIONS_AT_THE_VASCULAR_WALL | −0.601 | −1.670 | 0 |
| 5 | REACTOME_SYNTHESIS_OF_BILE_ACIDS_AND_BILE_SALTS_VIA_7ALPHA_HYDROXYCHOLESTEROL | 0.756 | 1.644 | 0.00617284 |
| 6 | REACTOME_PECAM1_INTERACTIONS | −0.855 | −1.685 | 0.001972387 |
| 7 | REACTOME_GABA_SYNTHESIS_RELEASE_REUPTAKE_AND_DEGRADATION | 0.773 | 1.558 | 0.003891051 |
| 8 | REACTOME_ACTIVATION_OF_THE_PRE_REPLICATIVE_COMPLEX | −0.773 | −1.613 | 0.008438818 |
| 9 | BIOCARTA_GATA3_PATHWAY | 0.746 | 1.688 | 0.002004008 |
| 10 | REACTOME_NEUROTRANSMITTER_RELEASE_CYCLE | 0.709 | 1.747 | 0 |
| 11 | BIOCARTA_G2_PATHWAY | −0.705 | −1.704 | 0.00625 |
| 12 | REACTOME_PASSIVE_TRANSPORT_BY_AQUAPORINS | −0.757 | −1.718 | 0.001865672 |
| 13 | REACTOME_PYRIMIDINE_METABOLISM | −0.702 | −1.726 | 0.001964637 |
| 14 | BIOCARTA_ACTINY_PATHWAY | −0.734 | −1.749 | 0.001945525 |
| 15 | REACTOME_SYNTHESIS_OF_GLYCOSYLPHOSPHATIDYLINOSITOL_GPI | 0.703 | 1.699 | 0.001976285 |
| 16 | REACTOME_ENDOGENOUS_STEROLS | −0.762 | −1.694 | 0.005703422 |
| 17 | REACTOME_GLYCOSPHINGOLIPID_METABOLISM | 0.590 | 1.763 | 0.006048387 |
Supplementary files 2, 3, 4, and 5 provide the full pathway enrichment analysis results for the breast cancer expression profiles.