Table II.
Cluster | Description | TW3/T0
|
N4/N0
|
TW6/T0
|
N10/N0
|
||||
---|---|---|---|---|---|---|---|---|---|
Mic | Mac | Mic | Mac | Mic | Mac | Mic | Mac | ||
Secondary and Hormone Metabolism | |||||||||
MtC00343.2 | Gibberellin biosynthesis enzyme ent-kaurene synthase | 0.54 | −0.82 | −2.38 | −2.98 | −2.47 | |||
MtC00442 | Squalene monooxygenase | −0.76 | −0.88 | −0.49 | −1.09 | −0.57 | −1.58 | −1.12 | |
MtC00578 | [NODULIN]MtN30 adenine phosphoribosyltransferase | 0.41 | 0.69 | 0.85 | 1.32 | −0.65 | 0.05 | ||
MtC00650 | Diphosphomevalonate decarboxylase | −0.26 | −1.17 | −0.15 | −0.68 | ||||
MtC00667 | Auxin-down regulated ARG10/Aluminum-included protein-like | 0.37 | 0.39 | 0.51 | 0.52 | 0.73 | 1.58 | 3.17 | |
MtC10128 | Auxin-down regulated /Aluminum-induced protein-like | −0.18 | 0.25 | 0.35 | 0.27 | 1.38 | 1.47 | ||
MtC10140 | Auxin responsive SAUR protein-like | 1.21 | 1.74 | ||||||
MtC10438 | Auxin-induced protein-like | −0.90 | −2.29 | −1.39 | −1.38 | −2.31 | −1.26 | ||
MtC10905 | Squalene synthase | −0.75 | −0.63 | 0.15 | −0.69 | −0.68 | −1.04 | −1.07 | |
MtC20178 | Gibberellin induced protein-like | −1.80 | −1.07 | −2.11 | −1.65 | −2.52 | −1.45 | −1.64 | |
MtC30281.1 | β-amyrin synthase | 0.94 | −0.10 | −0.64 | −0.11 | −1.64 | −0.73 | −2.32 | −1.12 |
MtC90141 | UDP-glucuronosyltransferase | 0.23 | 1.26 | 0.59 | 1.13 | 2.17 | 0.29 | ||
MtC90482 | 1-Deoxy-d-xylulose 5-phosphate synthase 2 | −0.39 | 0.47 | −1.24 | −0.59 | −1.85 | −2.21 | −2.68 | −3.33 |
MtC91838 | β-Amyrin synthase | −1.17 | −0.67 | −0.42 | −0.67 | −1.98 | −1.01 | −1.07 | |
Cell Wall | |||||||||
GVSN-9F12 | [NODULIN] nodulin 75 (ENOD2) | −0.29 | 1.13 | 2.79 | 0.50 | 5.49 | 0.66 | 5.73 | |
JVC-PG | [NODULIN]ENOD11 | 2.01 | 2.33 | 3.88 | 4.33 | 1.83 | 2.32 | 2.51 | 1.49 |
JVC-PG | [NODULIN]ENOD16 | 1.08 | −0.12 | 2.69 | 2.48 | 2.56 | 2.56 | 2.88 | 2.32 |
MtC00071 | [NODULIN]ENOD20 | 0.23 | 3.31 | 2.81 | 1.37 | ||||
MtC00240 | [NODULIN]ENOD12 | 0.80 | 0.84 | 2.28 | 3.51 | 1.35 | 2.31 | 2.21 | 1.14 |
MtC00351 | Arabinogalactan-protein (AGP4)-like Pro-rich protein | −1.08 | −0.54 | −1.07 | −0.88 | −1.15 | −1.30 | −1.65 | −1.48 |
MtC00548.2 | Endoxyloglucan transferase | −0.92 | −0.64 | −1.20 | −1.26 | ||||
MtC00582 | Endo-β-1,4-glucanase | 0.40 | 1.10 | −0.16 | −0.82 | ||||
MtC00611.2 | Xyloglucan endo-transglycosylase | −0.51 | −0.66 | −1.06 | |||||
MtC10168 | Pectin methyl-esterase | 0.32 | 0.98 | 1.28 | 1.74 | 0.49 | 0.70 | 1.15 | |
MtC10353 | Arabinogalactan protein | −1.00 | −0.44 | −1.47 | −0.68 | −1.13 | −0.73 | −2.30 | −1.25 |
MtC10404 | Pro-rich protein | −0.08 | −1.61 | −2.12 | −0.26 | −0.84 | −1.97 | −1.42 | |
MtC10798 | Expansin | −0.47 | 0.10 | −1.58 | −1.18 | −1.08 | −0.81 | −1.31 | −1.03 |
MtC10880 | UDP-glucose 6-dehydrogenase | −0.34 | −1.19 | −0.97 | −1.48 | −0.96 | −2.00 | −1.29 | |
MtC20373 | Endo-β-1,4-glucanase | 2.66 | 1.66 | 0.69 | 0.55 | 0.22 | |||
MtC30160 | Xyloglucan endo-transglycosylase | −0.95 | −0.06 | −1.92 | −1.21 | −2.07 | −1.01 | −3.17 | −1.39 |
MtC30178.2 | Extensin | 0.33 | −1.33 | −1.33 | −0.73 | −0.95 | −1.58 | −1.53 | |
MtC30264 | Cellulose synthase catalytic subunit | −0.31 | −1.25 | −0.59 | −1.08 | ||||
MtC90424 | Expansin | −0.41 | −1.31 | −1.27 | −1.41 | ||||
MtC90807 | Pectate lyase | 1.10 | 1.07 | −0.36 | 0.18 | 0.14 | −0.66 | ||
Protein Synthesis and Processing | |||||||||
MtC00093 | Microsomal signal peptidase 25 kD subunit | 0.39 | 0.45 | 1.38 | 1.90 | 0.85 | 1.81 | 1.26 | 1.02 |
MtC00153 | Microsomal signal peptidase 18 kD subunit | 0.40 | −0.04 | 1.64 | 1.12 | 1.59 | 1.14 | 0.59 | 0.43 |
MtC00546 | Microsomal signal peptidase 12 kD subunit | 0.34 | 2.24 | 1.09 | 1.17 | 0.72 | 0.80 | 0.27 | |
MtC10107.1 | Proteasome subunit β type | 0.66 | 1.20 | 1.55 | 3.16 | 1.09 | 2.27 | 1.16 | 1.77 |
MtC10260 | AutoInterpro: Cyclin-like F-box | −0.24 | 0.58 | −0.27 | 1.49 | 1.02 | |||
MtC10261 | Ubiquitin-conjugating enzyme E2-17 kD | 0.38 | 1.31 | 1.21 | 2.56 | 0.55 | 1.91 | 0.97 | 1.51 |
MtC10489 | 30S ribosomal protein S20 | 0.85 | 0.65 | 1.86 | 3.58 | 1.51 | 2.34 | 1.39 | 1.25 |
MtC20366.1 | Cys proteinase | −0.76 | −0.13 | −0.83 | −1.00 | −1.11 | −0.55 | −1.63 | −1.45 |
MtC30111 | 26S protease regulatory subunit 4 | −0.67 | −0.15 | −1.77 | −1.03 | −0.95 | −0.52 | −1.51 | −0.71 |
MtC30415 | Microsomal signal peptidase 23 kD subunit | 0.34 | 0.50 | 1.49 | 2.04 | 1.48 | 1.81 | 0.65 | 0.60 |
MtC90940 | [NODULIN]MtN7 AutoInterpro: Cyclin-like F-box | 0.36 | 0.26 | 1.38 | 1.29 | 1.26 | 1.82 | 1.38 | 0.66 |
MtC91471 | Cys proteinase | 2.10 | 2.23 |
All ratios are expressed as log2 values between normalized signals obtained by microarray (Mic) or macroarray (Mac) analysis for the following samples and corresponding noninoculated roots: isolated 4- and 10-d A17 nodules (N4 and N10); supernodulated TR122 whole root systems, 3 and 6 dpi (TW3 and TW6). All nodules were induced by wild-type S. meliloti inoculation. AutoInterpro corresponds to automatic annotation generated by Interproscan analysis on proteins predicted from the EST cluster sequences.